Analysis of interatomic Contacts of Structural Units in PDB entry:
4NOJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NOJ entry

There is 1 chain in PDB entry 4NOJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 30LYS 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4NOJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 43Right-handed 310
Helix 2
2
A
44 61Right-handed alpha
Helix 3
3
A
64 66Right-handed 310
Helix 4
4
A
106 110Right-handed 310
Helix 5
5
A
111 121Right-handed alpha
Helix 6
6
A
165 178Right-handed alpha
Helix 7
7
A
192 197Right-handed 310
Helix 8
8
A
234 244Right-handed alpha
Helix 9
9
A
252 263Right-handed alpha
Helix 10
10
A
275 281Right-handed 310
Helix 11
11
A
282 287Right-handed alpha
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There are 3 sheets in PDB entry 4NOJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
31 37parallel
Strand 3
A
142 148parallel
Strand 4
A
183 189parallel
Strand 5
A
206 210parallel
Strand 6
A
270 273anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
155 157anti-parallel
Strand 3
A
162 164anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 223first strand
Strand 2
A
230 233anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il