Analysis of interatomic Contacts of Structural Units in PDB entry:
4NQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NQY entry

There are 2 chains in PDB entry 4NQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3ASP 423
B
 MET 3ASP 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 4NQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 15Right-handed alpha
Helix 2
2
A
37 47Right-handed alpha
Helix 3
3
A
80 89Right-handed alpha
Helix 4
4
A
98 100Right-handed 310
Helix 5
5
A
104 109Right-handed alpha
Helix 6
6
A
122 132Right-handed 310
Helix 7
7
A
139 150Right-handed alpha
Helix 8
8
A
173 186Right-handed alpha
Helix 9
9
A
199 205Right-handed alpha
Helix 10
10
A
206 217Right-handed alpha
Helix 11
11
A
218 221Right-handed 310
Helix 12
12
A
230 245Right-handed alpha
Helix 13
13
A
288 292Right-handed alpha
Helix 14
14
A
308 322Right-handed alpha
Helix 15
15
A
337 347Right-handed alpha
Helix 16
16
A
348 356Right-handed alpha
Helix 17
17
A
365 371Right-handed alpha
Helix 18
18
A
405 416Right-handed alpha
Helix 19
19
B
4 15Right-handed alpha
Helix 20
20
B
37 47Right-handed alpha
Helix 21
21
B
79 89Right-handed alpha
Helix 22
22
B
98 100Right-handed 310
Helix 23
23
B
104 109Right-handed alpha
Helix 24
24
B
122 132Right-handed 310
Helix 25
25
B
139 150Right-handed alpha
Helix 26
26
B
173 186Right-handed alpha
Helix 27
27
B
199 205Right-handed alpha
Helix 28
28
B
206 217Right-handed alpha
Helix 29
29
B
218 221Right-handed 310
Helix 30
30
B
230 245Right-handed alpha
Helix 31
31
B
288 292Right-handed alpha
Helix 32
32
B
308 322Right-handed alpha
Helix 33
33
B
337 347Right-handed alpha
Helix 34
34
B
348 356Right-handed alpha
Helix 35
35
B
365 371Right-handed alpha
Helix 36
36
B
405 416Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 4NQY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 28first strand
Strand 2
A
151 155anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
60 64parallel
Strand 3
A
31 34parallel
Strand 4
A
117 120parallel
Strand 5
A
134 137parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
194 198parallel
Strand 3
A
159 165parallel
Strand 4
A
265 268parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
286 287anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 360first strand
Strand 2
A
330 333parallel
Strand 3
A
298 301parallel
Strand 4
A
381 384parallel
Strand 5
A
400 403parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 28first strand
Strand 2
B
151 155anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 96first strand
Strand 2
B
60 64parallel
Strand 3
B
31 34parallel
Strand 4
B
117 120parallel
Strand 5
B
134 137parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 227first strand
Strand 2
B
194 198parallel
Strand 3
B
159 165parallel
Strand 4
B
265 268parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 276first strand
Strand 2
B
286 287anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 360first strand
Strand 2
B
330 333parallel
Strand 3
B
298 301parallel
Strand 4
B
381 384parallel
Strand 5
B
400 403parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il