Analysis of interatomic Contacts of Structural Units in PDB entry:
4NSY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NSY entry

There are 2 chains in PDB entry 4NSY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1THR 264
B
 GLY 1GLY 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4NSY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
20 23Right-handed 310
Helix 3
3
A
57 59Right-handed 310
Helix 4
4
A
62 69Right-handed alpha
Helix 5
5
A
124 128Right-handed 310
Helix 6
6
A
149 153Right-handed 310
Helix 7
7
A
168 172Right-handed 310
Helix 8
8
A
219 222Right-handed 310
Helix 9
9
A
230 236Right-handed alpha
Helix 10
10
A
239 243Right-handed 310
Helix 11
11
A
244 249Right-handed alpha
Helix 12
12
B
12 16Right-handed 310
Helix 13
13
B
20 23Right-handed 310
Helix 14
14
B
57 59Right-handed 310
Helix 15
15
B
62 69Right-handed alpha
Helix 16
16
B
124 128Right-handed 310
Helix 17
17
B
149 153Right-handed 310
Helix 18
18
B
168 172Right-handed 310
Helix 19
19
B
219 222Right-handed 310
Helix 20
20
B
230 236Right-handed alpha
Helix 21
21
B
239 243Right-handed 310
Helix 22
22
B
244 249Right-handed alpha
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There are 8 sheets in PDB entry 4NSY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
156 160anti-parallel
Strand 3
A
144 148anti-parallel
Strand 4
A
197 199anti-parallel
Strand 5
A
204 211anti-parallel
Strand 6
A
224 229anti-parallel
Strand 7
A
177 181anti-parallel
Strand 8
A
165 167anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
156 160anti-parallel
Strand 3
A
144 148anti-parallel
Strand 4
A
197 199anti-parallel
Strand 5
A
204 211anti-parallel
Strand 6
A
133 135parallel
Strand 7
A
257 258anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
70 72anti-parallel
Strand 3
A
25 30anti-parallel
Strand 4
A
33 40anti-parallel
Strand 5
A
51 55anti-parallel
Strand 6
A
114 119anti-parallel
Strand 7
A
103 109anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
261 262anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
156 160anti-parallel
Strand 3
B
144 148anti-parallel
Strand 4
B
197 199anti-parallel
Strand 5
B
204 211anti-parallel
Strand 6
B
224 229anti-parallel
Strand 7
B
177 181anti-parallel
Strand 8
B
165 167anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
156 160anti-parallel
Strand 3
B
144 148anti-parallel
Strand 4
B
197 199anti-parallel
Strand 5
B
204 211anti-parallel
Strand 6
B
133 135parallel
Strand 7
B
257 258anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
70 72anti-parallel
Strand 3
B
25 30anti-parallel
Strand 4
B
33 40anti-parallel
Strand 5
B
51 55anti-parallel
Strand 6
B
114 119anti-parallel
Strand 7
B
103 109anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 131first strand
Strand 2
B
261 262anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il