Analysis of interatomic Contacts of Structural Units in PDB entry:
4NTE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NTE entry

There are 2 chains in PDB entry 4NTE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 4GLY 297
B
 THR 1GLY 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4NTE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
57 71Right-handed alpha
Helix 3
3
A
123 127Right-handed 310
Helix 4
4
A
134 139Right-handed alpha
Helix 5
5
A
140 143Right-handed 310
Helix 6
6
A
153 163Right-handed alpha
Helix 7
7
A
180 190Right-handed alpha
Helix 8
8
A
232 237Right-handed alpha
Helix 9
9
A
267 270Right-handed 310
Helix 10
10
A
275 297Right-handed alpha
Helix 11
11
B
14 27Right-handed alpha
Helix 12
12
B
57 71Right-handed alpha
Helix 13
13
B
123 127Right-handed 310
Helix 14
14
B
134 139Right-handed alpha
Helix 15
15
B
140 143Right-handed 310
Helix 16
16
B
153 163Right-handed alpha
Helix 17
17
B
164 166Right-handed 310
Helix 18
18
B
181 190Right-handed alpha
Helix 19
19
B
232 237Right-handed alpha
Helix 20
20
B
267 270Right-handed 310
Helix 21
21
B
275 297Right-handed alpha
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There are 12 sheets in PDB entry 4NTE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
31 35parallel
Strand 3
A
5 11parallel
Strand 4
A
101 109parallel
Strand 5
A
92 96anti-parallel
Strand 6
A
82 86anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
31 35parallel
Strand 3
A
5 11parallel
Strand 4
A
101 109parallel
Strand 5
A
263 265parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 116first strand
Strand 2
A
226 229anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
220 223parallel
Strand 3
A
144 150parallel
Strand 4
A
167 172parallel
Strand 5
A
193 195parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
206 210anti-parallel
Strand 3
A
215 218anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 243first strand
Strand 2
A
248 250anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 79first strand
Strand 2
B
31 35parallel
Strand 3
B
6 11parallel
Strand 4
B
101 109parallel
Strand 5
B
92 96anti-parallel
Strand 6
B
82 87anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 79first strand
Strand 2
B
31 35parallel
Strand 3
B
6 11parallel
Strand 4
B
101 109parallel
Strand 5
B
263 265parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 116first strand
Strand 2
B
226 229anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 132first strand
Strand 2
B
220 223parallel
Strand 3
B
146 150parallel
Strand 4
B
168 172parallel
Strand 5
B
193 195parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 203first strand
Strand 2
B
207 210anti-parallel
Strand 3
B
215 217anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 244first strand
Strand 2
B
247 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il