Analysis of interatomic Contacts of Structural Units in PDB entry:
4NU8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NU8 entry

There are 3 chains in PDB entry 4NU8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 MET 1VAL 41
X
 CYS 43PHE 311
A
 THR 265ILE 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 4NU8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
6 11Right-handed 310
Helix 2
2
X
36 41Right-handed 310
Helix 3
3
X
42 56Right-handed alpha
Helix 4
4
X
71 85Right-handed alpha
Helix 5
5
X
98 107Right-handed alpha
Helix 6
6
X
115 117Right-handed 310
Helix 7
7
X
118 134Right-handed alpha
Helix 8
8
X
147 156Right-handed alpha
Helix 9
9
X
156 166Right-handed alpha
Helix 10
10
X
179 192Right-handed alpha
Helix 11
11
X
208 215Right-handed alpha
Helix 12
12
X
239 243Right-handed 310
Helix 13
13
X
250 266Right-handed alpha
Helix 14
14
X
270 285Right-handed alpha
Helix 15
15
X
286 290Right-handed 310
Helix 16
16
X
301 306Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 4NU8. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
16 18first strand
Strand 2
X
28 32anti-parallel
Strand 3
X
294 298parallel
Strand 4
X
171 175parallel
Strand 5
X
198 204parallel
Strand 6
X
245 249parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
110 114first strand
Strand 2
X
88 93parallel
Strand 3
X
64 68parallel
Strand 4
X
138 139parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il