Analysis of interatomic Contacts of Structural Units in PDB entry:
4NV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NV5 entry

There are 2 chains in PDB entry 4NV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 17GLY 282
B
 THR 13LEU 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4NV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 43Right-handed alpha
Helix 2
2
A
55 62Right-handed alpha
Helix 3
3
A
72 89Right-handed alpha
Helix 4
4
A
95 125Right-handed alpha
Helix 5
5
A
130 149Right-handed alpha
Helix 6
6
A
157 182Right-handed alpha
Helix 7
7
A
186 200Right-handed alpha
Helix 8
8
A
209 220Right-handed alpha
Helix 9
9
A
221 226Right-handed 310
Helix 10
10
A
241 247Right-handed alpha
Helix 11
11
A
267 276Right-handed alpha
Helix 12
12
B
14 18Right-handed alpha
Helix 13
13
B
18 43Right-handed alpha
Helix 14
14
B
55 60Right-handed alpha
Helix 15
15
B
72 89Right-handed alpha
Helix 16
16
B
95 124Right-handed alpha
Helix 17
17
B
130 149Right-handed alpha
Helix 18
18
B
156 180Right-handed alpha
Helix 19
19
B
186 200Right-handed alpha
Helix 20
20
B
209 220Right-handed alpha
Helix 21
21
B
221 225Right-handed 310
Helix 22
22
B
241 248Right-handed alpha
Helix 23
23
B
267 276Right-handed alpha
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There are 4 sheets in PDB entry 4NV5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
70 71anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
202 205parallel
Strand 3
A
254 257anti-parallel
Strand 4
A
260 263anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
70 71anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 230first strand
Strand 2
B
202 205parallel
Strand 3
B
254 257anti-parallel
Strand 4
B
260 263anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il