Analysis of interatomic Contacts of Structural Units in PDB entry:
4NVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NVR entry

There are 4 chains in PDB entry 4NVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3LEU 304
B
 THR 3LEU 304
C
 LEU 4LEU 304
D
 LEU 4LEU 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 4NVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 54Right-handed 310
Helix 2
2
A
56 61Right-handed alpha
Helix 3
3
A
86 89Right-handed 310
Helix 4
4
A
90 105Right-handed alpha
Helix 5
5
A
116 129Right-handed alpha
Helix 6
6
A
143 150Right-handed alpha
Helix 7
7
A
152 159Right-handed alpha
Helix 8
8
A
160 165Right-handed alpha
Helix 9
9
A
170 178Right-handed alpha
Helix 10
10
A
179 193Right-handed alpha
Helix 11
11
A
199 211Right-handed alpha
Helix 12
12
A
212 227Right-handed alpha
Helix 13
13
A
228 237Right-handed alpha
Helix 14
14
A
254 260Right-handed alpha
Helix 15
15
A
261 267Right-handed alpha
Helix 16
16
A
283 288Right-handed alpha
Helix 17
17
A
288 303Right-handed alpha
Helix 18
18
B
49 54Right-handed 310
Helix 19
19
B
56 61Right-handed alpha
Helix 20
20
B
86 89Right-handed 310
Helix 21
21
B
90 105Right-handed alpha
Helix 22
22
B
116 129Right-handed alpha
Helix 23
23
B
143 150Right-handed alpha
Helix 24
24
B
152 159Right-handed alpha
Helix 25
25
B
160 165Right-handed alpha
Helix 26
26
B
170 179Right-handed alpha
Helix 27
27
B
179 193Right-handed alpha
Helix 28
28
B
199 211Right-handed alpha
Helix 29
29
B
212 227Right-handed alpha
Helix 30
30
B
228 237Right-handed alpha
Helix 31
31
B
254 260Right-handed alpha
Helix 32
32
B
263 267Right-handed 310
Helix 33
33
B
283 288Right-handed alpha
Helix 34
34
B
288 303Right-handed alpha
Helix 35
35
C
49 54Right-handed 310
Helix 36
36
C
56 61Right-handed alpha
Helix 37
37
C
86 89Right-handed 310
Helix 38
38
C
90 106Right-handed alpha
Helix 39
39
C
116 129Right-handed alpha
Helix 40
40
C
143 150Right-handed alpha
Helix 41
41
C
152 159Right-handed alpha
Helix 42
42
C
160 165Right-handed alpha
Helix 43
43
C
170 179Right-handed alpha
Helix 44
44
C
179 192Right-handed alpha
Helix 45
45
C
199 211Right-handed alpha
Helix 46
46
C
212 228Right-handed alpha
Helix 47
47
C
228 237Right-handed alpha
Helix 48
48
C
254 260Right-handed alpha
Helix 49
49
C
261 268Right-handed alpha
Helix 50
50
C
283 288Right-handed alpha
Helix 51
51
C
288 304Right-handed alpha
Helix 52
52
D
49 54Right-handed 310
Helix 53
53
D
56 61Right-handed alpha
Helix 54
54
D
86 89Right-handed 310
Helix 55
55
D
90 105Right-handed alpha
Helix 56
56
D
116 129Right-handed alpha
Helix 57
57
D
143 150Right-handed alpha
Helix 58
58
D
152 159Right-handed alpha
Helix 59
59
D
160 165Right-handed alpha
Helix 60
60
D
170 178Right-handed alpha
Helix 61
61
D
179 192Right-handed alpha
Helix 62
62
D
199 211Right-handed alpha
Helix 63
63
D
212 228Right-handed alpha
Helix 64
64
D
228 237Right-handed alpha
Helix 65
65
D
254 260Right-handed alpha
Helix 66
66
D
261 268Right-handed alpha
Helix 67
67
D
283 288Right-handed alpha
Helix 68
68
D
288 304Right-handed alpha
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There are 4 sheets in PDB entry 4NVR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 9first strand
Strand 2
A
17 22anti-parallel
Strand 3
A
28 35anti-parallel
Strand 4
A
65 69anti-parallel
Strand 5
A
39 43parallel
Strand 6
A
110 115parallel
Strand 7
A
133 139parallel
Strand 8
A
246 251parallel
Strand 9
A
273 278parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 9first strand
Strand 2
B
17 22anti-parallel
Strand 3
B
28 35anti-parallel
Strand 4
B
65 69anti-parallel
Strand 5
B
39 43parallel
Strand 6
B
110 115parallel
Strand 7
B
133 139parallel
Strand 8
B
246 251parallel
Strand 9
B
273 278parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 9first strand
Strand 2
C
17 22anti-parallel
Strand 3
C
28 35anti-parallel
Strand 4
C
64 69anti-parallel
Strand 5
C
38 43parallel
Strand 6
C
110 115parallel
Strand 7
C
133 139parallel
Strand 8
C
246 251parallel
Strand 9
C
273 278parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 9first strand
Strand 2
D
17 22anti-parallel
Strand 3
D
28 35anti-parallel
Strand 4
D
64 69anti-parallel
Strand 5
D
38 43parallel
Strand 6
D
110 115parallel
Strand 7
D
133 139parallel
Strand 8
D
246 251parallel
Strand 9
D
273 278parallel
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