Analysis of interatomic Contacts of Structural Units in PDB entry:
4NWY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NWY entry

There are 4 chains in PDB entry 4NWY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 257TRP 384
B
 SER 257HIS 374
C
 SER 257GLN 386
D
 SER 257ASP 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4NWY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
266 271Right-handed alpha
Helix 2
2
A
288 301Right-handed alpha
Helix 3
3
A
302 304Right-handed 310
Helix 4
4
A
316 318Right-handed 310
Helix 5
5
A
319 326Right-handed alpha
Helix 6
6
A
355 368Right-handed alpha
Helix 7
7
B
266 271Right-handed alpha
Helix 8
8
B
288 301Right-handed alpha
Helix 9
9
B
302 304Right-handed 310
Helix 10
10
B
316 318Right-handed 310
Helix 11
11
B
319 326Right-handed alpha
Helix 12
12
B
355 368Right-handed alpha
Helix 13
13
C
265 271Right-handed alpha
Helix 14
14
C
288 301Right-handed alpha
Helix 15
15
C
302 304Right-handed 310
Helix 16
16
C
316 318Right-handed 310
Helix 17
17
C
319 326Right-handed alpha
Helix 18
18
C
355 368Right-handed alpha
Helix 19
19
C
382 386Right-handed 310
Helix 20
20
D
262 272Right-handed alpha
Helix 21
21
D
288 301Right-handed alpha
Helix 22
22
D
316 318Right-handed 310
Helix 23
23
D
319 326Right-handed alpha
Helix 24
24
D
355 368Right-handed alpha
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There are 4 sheets in PDB entry 4NWY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
308 313parallel
Strand 3
A
276 282parallel
Strand 4
A
335 340anti-parallel
Strand 5
A
346 348anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 260first strand
Strand 2
B
308 313parallel
Strand 3
B
276 282parallel
Strand 4
B
335 340anti-parallel
Strand 5
B
346 348anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
258 260first strand
Strand 2
C
308 313parallel
Strand 3
C
276 282parallel
Strand 4
C
335 340anti-parallel
Strand 5
C
346 348anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
259 260first strand
Strand 2
D
308 313parallel
Strand 3
D
276 282parallel
Strand 4
D
335 340anti-parallel
Strand 5
D
346 348anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il