Analysis of interatomic Contacts of Structural Units in PDB entry:
4NYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NYH entry

There are 3 chains in PDB entry 4NYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 24ARG 205
B
 GLY 24ARG 205
C
 ASN 29ARG 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 4NYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 38Right-handed 310
Helix 2
2
A
58 65Right-handed 310
Helix 3
3
A
66 70Right-handed 310
Helix 4
4
A
72 83Right-handed alpha
Helix 5
5
A
101 105Right-handed 310
Helix 6
6
A
123 140Right-handed alpha
Helix 7
7
A
156 172Right-handed alpha
Helix 8
8
A
174 187Right-handed alpha
Helix 9
9
A
192 202Right-handed alpha
Helix 10
10
B
34 38Right-handed 310
Helix 11
11
B
58 65Right-handed 310
Helix 12
12
B
66 70Right-handed 310
Helix 13
13
B
72 83Right-handed alpha
Helix 14
14
B
101 105Right-handed 310
Helix 15
15
B
123 141Right-handed alpha
Helix 16
16
B
156 172Right-handed alpha
Helix 17
17
B
174 187Right-handed alpha
Helix 18
18
B
192 202Right-handed alpha
Helix 19
19
C
34 38Right-handed 310
Helix 20
20
C
58 65Right-handed 310
Helix 21
21
C
66 70Right-handed 310
Helix 22
22
C
72 83Right-handed alpha
Helix 23
23
C
101 105Right-handed 310
Helix 24
24
C
123 141Right-handed alpha
Helix 25
25
C
156 172Right-handed alpha
Helix 26
26
C
174 187Right-handed alpha
Helix 27
27
C
192 202Right-handed alpha
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There are 3 sheets in PDB entry 4NYH. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
147 151parallel
Strand 3
A
87 92parallel
Strand 4
A
111 113parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
147 151parallel
Strand 3
B
87 92parallel
Strand 4
B
111 113parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 53first strand
Strand 2
C
147 151parallel
Strand 3
C
87 92parallel
Strand 4
C
111 113parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il