Analysis of interatomic Contacts of Structural Units in PDB entry:
4NYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NYT entry

There are 3 chains in PDB entry 4NYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 PRO 72PRO 287
A
 GLY 76PRO 287
B
 GLY 76PRO 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4NYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
79 86Right-handed alpha
Helix 2
2
C
133 140Right-handed alpha
Helix 3
3
C
151 160Right-handed alpha
Helix 4
4
C
189 193Right-handed 310
Helix 5
5
C
210 214Right-handed 310
Helix 6
6
C
231 236Right-handed alpha
Helix 7
7
A
79 86Right-handed alpha
Helix 8
8
A
111 115Right-handed 310
Helix 9
9
A
133 140Right-handed alpha
Helix 10
10
A
151 160Right-handed alpha
Helix 11
11
A
189 193Right-handed 310
Helix 12
12
A
210 214Right-handed 310
Helix 13
13
A
231 236Right-handed alpha
Helix 14
14
B
79 86Right-handed alpha
Helix 15
15
B
111 115Right-handed 310
Helix 16
16
B
133 140Right-handed alpha
Helix 17
17
B
151 160Right-handed alpha
Helix 18
18
B
189 193Right-handed 310
Helix 19
19
B
210 214Right-handed 310
Helix 20
20
B
231 237Right-handed alpha
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There are 14 sheets in PDB entry 4NYT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 97first strand
Strand 2
C
103 109anti-parallel
Strand 3
C
117 123anti-parallel
Strand 4
C
148 149anti-parallel
Strand 5
C
141 142anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 97first strand
Strand 2
C
103 109anti-parallel
Strand 3
C
117 123anti-parallel
Strand 4
C
280 286anti-parallel
Strand 5
C
165 171anti-parallel
Strand 6
C
177 182anti-parallel
Strand 7
C
201 203anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
185 187first strand
Strand 2
C
196 198anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
257 258first strand
Strand 2
C
276 277anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 97first strand
Strand 2
A
103 109anti-parallel
Strand 3
A
117 123anti-parallel
Strand 4
A
148 149anti-parallel
Strand 5
A
141 142anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 97first strand
Strand 2
A
103 109anti-parallel
Strand 3
A
117 123anti-parallel
Strand 4
A
280 286anti-parallel
Strand 5
A
165 171anti-parallel
Strand 6
A
177 182anti-parallel
Strand 7
A
201 203anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
196 198anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
267 268anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
276 277anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 97first strand
Strand 2
B
103 109anti-parallel
Strand 3
B
117 123anti-parallel
Strand 4
B
148 149anti-parallel
Strand 5
B
141 142anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 97first strand
Strand 2
B
103 109anti-parallel
Strand 3
B
117 123anti-parallel
Strand 4
B
280 286anti-parallel
Strand 5
B
165 171anti-parallel
Strand 6
B
177 182anti-parallel
Strand 7
B
201 203anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 187first strand
Strand 2
B
196 198anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 249first strand
Strand 2
B
267 268anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 258first strand
Strand 2
B
276 277anti-parallel
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