Analysis of interatomic Contacts of Structural Units in PDB entry:
4NYY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4NYY entry

There are 4 chains in PDB entry 4NYY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 29	LEU 433
B	SER 28	GLU 432
C	THR 29	GLU 432
D	THR 29	LEU 433

There are 63 helices in PDB entry 4NYY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	45	56	Right-handed alpha
Helix 2	2	A	66	69	Right-handed 310
Helix 3	3	A	79	90	Right-handed alpha
Helix 4	4	A	102	106	Right-handed 310
Helix 5	5	A	113	122	Right-handed alpha
Helix 6	6	A	131	150	Right-handed alpha
Helix 7	7	A	152	156	Right-handed 310
Helix 8	8	A	206	222	Right-handed alpha
Helix 9	9	A	242	247	Right-handed 310
Helix 10	10	A	249	261	Right-handed alpha
Helix 11	11	A	264	269	Right-handed alpha
Helix 12	12	A	271	275	Right-handed 310
Helix 13	13	A	283	287	Right-handed 310
Helix 14	14	A	297	299	Right-handed 310
Helix 15	15	A	307	326	Right-handed alpha
Helix 16	16	A	331	335	Right-handed 310
Helix 17	17	B	45	57	Right-handed alpha
Helix 18	18	B	66	69	Right-handed 310
Helix 19	19	B	79	90	Right-handed alpha
Helix 20	20	B	102	106	Right-handed 310
Helix 21	21	B	113	122	Right-handed alpha
Helix 22	22	B	131	150	Right-handed alpha
Helix 23	23	B	152	156	Right-handed 310
Helix 24	24	B	206	222	Right-handed alpha
Helix 25	25	B	242	247	Right-handed 310
Helix 26	26	B	249	261	Right-handed alpha
Helix 27	27	B	264	269	Right-handed alpha
Helix 28	28	B	271	275	Right-handed 310
Helix 29	29	B	283	287	Right-handed 310
Helix 30	30	B	297	299	Right-handed 310
Helix 31	31	B	307	326	Right-handed alpha
Helix 32	32	B	331	335	Right-handed 310
Helix 33	33	C	45	56	Right-handed alpha
Helix 34	34	C	66	69	Right-handed 310
Helix 35	35	C	79	90	Right-handed alpha
Helix 36	36	C	102	106	Right-handed 310
Helix 37	37	C	113	122	Right-handed alpha
Helix 38	38	C	131	150	Right-handed alpha
Helix 39	39	C	152	156	Right-handed 310
Helix 40	40	C	206	222	Right-handed alpha
Helix 41	41	C	242	247	Right-handed 310
Helix 42	42	C	249	261	Right-handed alpha
Helix 43	43	C	264	269	Right-handed alpha
Helix 44	44	C	271	275	Right-handed 310
Helix 45	45	C	283	287	Right-handed 310
Helix 46	46	C	297	299	Right-handed 310
Helix 47	47	C	307	326	Right-handed alpha
Helix 48	48	C	331	335	Right-handed 310
Helix 49	49	D	43	56	Right-handed alpha
Helix 50	50	D	66	69	Right-handed 310
Helix 51	51	D	79	90	Right-handed alpha
Helix 52	52	D	102	106	Right-handed 310
Helix 53	53	D	113	122	Right-handed alpha
Helix 54	54	D	131	150	Right-handed alpha
Helix 55	55	D	152	156	Right-handed 310
Helix 56	56	D	206	222	Right-handed alpha
Helix 57	57	D	242	247	Right-handed 310
Helix 58	58	D	249	261	Right-handed alpha
Helix 59	59	D	264	269	Right-handed alpha
Helix 60	60	D	271	275	Right-handed 310
Helix 61	61	D	283	287	Right-handed 310
Helix 62	62	D	297	299	Right-handed 310
Helix 63	63	D	307	326	Right-handed alpha

There are 36 sheets in PDB entry 4NYY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	96	first strand
Strand 2	A	61	64	parallel
Strand 3	A	32	41	parallel
Strand 4	A	289	295	parallel
Strand 5	A	231	232	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	96	first strand
Strand 2	A	61	64	parallel
Strand 3	A	32	41	parallel
Strand 4	A	327	329	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	225	226	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	176	first strand
Strand 2	A	179	181	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	305	306	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	345	first strand
Strand 2	A	364	365	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	353	first strand
Strand 2	A	356	360	anti-parallel
Strand 3	A	379	381	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	394	first strand
Strand 2	A	413	414	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	402	first strand
Strand 2	A	405	409	anti-parallel
Strand 3	A	428	430	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	96	first strand
Strand 2	B	61	64	parallel
Strand 3	B	32	41	parallel
Strand 4	B	289	295	parallel
Strand 5	B	231	232	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	96	first strand
Strand 2	B	61	64	parallel
Strand 3	B	32	41	parallel
Strand 4	B	327	329	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	225	226	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	176	first strand
Strand 2	B	179	181	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	302	first strand
Strand 2	B	305	306	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	345	first strand
Strand 2	B	364	365	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	353	first strand
Strand 2	B	356	360	anti-parallel
Strand 3	B	379	381	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	394	first strand
Strand 2	B	413	414	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	402	first strand
Strand 2	B	405	409	anti-parallel
Strand 3	B	428	430	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	96	first strand
Strand 2	C	61	64	parallel
Strand 3	C	32	41	parallel
Strand 4	C	289	295	parallel
Strand 5	C	231	232	parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	96	first strand
Strand 2	C	61	64	parallel
Strand 3	C	32	41	parallel
Strand 4	C	327	329	parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	225	226	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	176	first strand
Strand 2	C	179	181	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	305	306	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	345	first strand
Strand 2	C	364	365	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	353	first strand
Strand 2	C	356	360	anti-parallel
Strand 3	C	379	381	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	394	first strand
Strand 2	C	413	414	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	402	first strand
Strand 2	C	405	409	anti-parallel
Strand 3	C	428	430	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	96	first strand
Strand 2	D	61	64	parallel
Strand 3	D	32	41	parallel
Strand 4	D	289	295	parallel
Strand 5	D	231	232	parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	96	first strand
Strand 2	D	61	64	parallel
Strand 3	D	32	41	parallel
Strand 4	D	327	329	parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	165	first strand
Strand 2	D	225	226	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	176	first strand
Strand 2	D	179	181	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	302	first strand
Strand 2	D	305	306	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	345	first strand
Strand 2	D	364	365	anti-parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	353	first strand
Strand 2	D	356	360	anti-parallel
Strand 3	D	379	381	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	394	first strand
Strand 2	D	413	414	anti-parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	402	first strand
Strand 2	D	405	409	anti-parallel
Strand 3	D	428	430	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4NYY

Analysis of interatomic Contacts of Structural Units in PDB entry:
4NYY