Analysis of interatomic Contacts of Structural Units in PDB entry:
4NYZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NYZ entry

There is 1 chain in PDB entry 4NYZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1TRP 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4NYZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 30Right-handed alpha
Helix 2
2
A
48 53Right-handed alpha
Helix 3
3
A
54 58Right-handed 310
Helix 4
4
A
65 84Right-handed alpha
Helix 5
5
A
91 98Right-handed alpha
Helix 6
6
A
121 125Right-handed alpha
Helix 7
7
A
134 146Right-handed alpha
Helix 8
8
A
165 170Right-handed alpha
Helix 9
9
A
180 199Right-handed alpha
Helix 10
10
A
213 226Right-handed alpha
Helix 11
11
A
244 255Right-handed alpha
Helix 12
12
A
257 261Right-handed 310
Helix 13
13
A
265 274Right-handed alpha
Helix 14
14
A
297 318Right-handed alpha
Helix 15
15
A
322 326Right-handed 310
Helix 16
16
A
344 354Right-handed alpha
Helix 17
17
A
396 405Right-handed alpha
Helix 18
18
A
411 424Right-handed alpha
Helix 19
19
A
427 441Right-handed alpha
Helix 20
20
A
447 458Right-handed alpha
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There are 6 sheets in PDB entry 4NYZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
283 288anti-parallel
Strand 3
A
275 280anti-parallel
Strand 4
A
154 158parallel
Strand 5
A
175 178anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
406 407anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
162 164anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
132 133anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 235first strand
Strand 2
A
334 339anti-parallel
Strand 3
A
327 331anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 387first strand
Strand 2
A
390 395anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il