Analysis of interatomic Contacts of Structural Units in PDB entry:
4NZ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NZ9 entry

There are 2 chains in PDB entry 4NZ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2LYS 256
B
 ASN 3LYS 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 4NZ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 31Right-handed alpha
Helix 2
2
A
41 52Right-handed alpha
Helix 3
3
A
69 85Right-handed alpha
Helix 4
4
A
98 103Right-handed 310
Helix 5
5
A
105 109Right-handed 310
Helix 6
6
A
110 122Right-handed alpha
Helix 7
7
A
122 134Right-handed alpha
Helix 8
8
A
147 151Right-handed 310
Helix 9
9
A
157 179Right-handed alpha
Helix 10
10
A
195 199Right-handed 310
Helix 11
11
A
203 215Right-handed alpha
Helix 12
12
A
222 235Right-handed alpha
Helix 13
13
A
236 239Right-handed 310
Helix 14
14
A
251 255Right-handed 310
Helix 15
15
B
19 31Right-handed alpha
Helix 16
16
B
41 52Right-handed alpha
Helix 17
17
B
69 85Right-handed alpha
Helix 18
18
B
98 103Right-handed 310
Helix 19
19
B
105 109Right-handed 310
Helix 20
20
B
110 122Right-handed alpha
Helix 21
21
B
122 134Right-handed alpha
Helix 22
22
B
147 151Right-handed 310
Helix 23
23
B
158 179Right-handed alpha
Helix 24
24
B
197 201Right-handed 310
Helix 25
25
B
203 215Right-handed alpha
Helix 26
26
B
222 235Right-handed alpha
Helix 27
27
B
236 239Right-handed 310
Helix 28
28
B
251 255Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 4NZ9. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
34 39parallel
Strand 3
A
8 12parallel
Strand 4
A
89 92parallel
Strand 5
A
140 146parallel
Strand 6
A
183 190parallel
Strand 7
A
245 248parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 64first strand
Strand 2
B
34 39parallel
Strand 3
B
8 12parallel
Strand 4
B
89 92parallel
Strand 5
B
140 146parallel
Strand 6
B
183 190parallel
Strand 7
B
245 248parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il