Analysis of interatomic Contacts of Structural Units in PDB entry:
4NZJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NZJ entry

There is 1 chain in PDB entry 4NZJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 27ASP 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 4NZJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
129 134Right-handed alpha
Helix 2
2
A
135 137Right-handed 310
Helix 3
3
A
138 152Right-handed alpha
Helix 4
4
A
154 158Right-handed 310
Helix 5
5
A
188 200Right-handed alpha
Helix 6
6
A
224 236Right-handed alpha
Helix 7
7
A
250 267Right-handed alpha
Helix 8
8
A
283 287Right-handed 310
Helix 9
9
A
309 314Right-handed alpha
Helix 10
10
A
318 327Right-handed alpha
Helix 11
11
A
328 333Right-handed 310
Helix 12
12
A
363 377Right-handed alpha
Helix 13
13
A
391 399Right-handed alpha
Helix 14
14
A
400 408Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 4NZJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
58 59anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
105 115parallel
Strand 3
A
92 102anti-parallel
Strand 4
A
65 69anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
83 87anti-parallel
Strand 3
A
75 78anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 340first strand
Strand 2
A
295 297parallel
Strand 3
A
273 277parallel
Strand 4
A
239 243parallel
Strand 5
A
203 209parallel
Strand 6
A
161 163parallel
Strand 7
A
125 128parallel
Strand 8
A
381 383parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 420first strand
Strand 2
A
424 430anti-parallel
Strand 3
A
436 442anti-parallel
Strand 4
A
491 496anti-parallel
Strand 5
A
464 467anti-parallel
Strand 6
A
472 475anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 453first strand
Strand 2
A
481 486anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il