Analysis of interatomic Contacts of Structural Units in PDB entry:
4NZV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NZV entry

There are 2 chains in PDB entry 4NZV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -4GLU 324
B
 HIS -2GLU 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4NZV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 48Right-handed alpha
Helix 2
2
A
67 85Right-handed alpha
Helix 3
3
A
97 110Right-handed alpha
Helix 4
4
A
149 169Right-handed alpha
Helix 5
5
A
201 205Right-handed 310
Helix 6
6
A
281 294Right-handed alpha
Helix 7
7
A
312 317Right-handed alpha
Helix 8
8
B
30 48Right-handed alpha
Helix 9
9
B
67 85Right-handed alpha
Helix 10
10
B
97 110Right-handed alpha
Helix 11
11
B
149 169Right-handed alpha
Helix 12
12
B
201 205Right-handed 310
Helix 13
13
B
281 294Right-handed alpha
Helix 14
14
B
312 317Right-handed alpha
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There are 10 sheets in PDB entry 4NZV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
87 89parallel
Strand 3
A
52 55parallel
Strand 4
A
6 12parallel
Strand 5
A
248 255anti-parallel
Strand 6
A
258 266anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
28 29anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 125first strand
Strand 2
A
131 137anti-parallel
Strand 3
A
174 180parallel
Strand 4
A
211 215parallel
Strand 5
A
229 231parallel
Strand 6
A
221 224anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
199 200parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 279first strand
Strand 2
A
298 305parallel
Strand 3
A
320 324parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 115first strand
Strand 2
B
87 89parallel
Strand 3
B
52 55parallel
Strand 4
B
6 12parallel
Strand 5
B
248 255anti-parallel
Strand 6
B
261 266anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
28 29anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 125first strand
Strand 2
B
131 137anti-parallel
Strand 3
B
174 180parallel
Strand 4
B
211 215parallel
Strand 5
B
228 231parallel
Strand 6
B
221 224anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
199 200parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 279first strand
Strand 2
B
298 305parallel
Strand 3
B
320 324parallel
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