Analysis of interatomic Contacts of Structural Units in PDB entry:
4O0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4O0M entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 4O0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11ILE 430
A
 ILE 433GLU 504
B
 THR 12ILE 430
B
 ILE 433GLU 501
C
 PRO 11ILE 430
C
 ILE 433ASP 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 4O0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 33Right-handed alpha
Helix 2
2
A
52 69Right-handed alpha
Helix 3
3
A
80 89Right-handed alpha
Helix 4
4
A
90 92Right-handed 310
Helix 5
5
A
95 101Right-handed alpha
Helix 6
6
A
127 139Right-handed alpha
Helix 7
7
A
148 152Right-handed 310
Helix 8
8
A
157 175Right-handed alpha
Helix 9
9
A
197 202Right-handed alpha
Helix 10
10
A
267 274Right-handed alpha
Helix 11
11
A
293 308Right-handed alpha
Helix 12
12
A
320 330Right-handed alpha
Helix 13
13
A
334 341Right-handed alpha
Helix 14
14
A
350 354Right-handed 310
Helix 15
15
A
355 371Right-handed alpha
Helix 16
16
A
388 406Right-handed alpha
Helix 17
17
B
28 33Right-handed alpha
Helix 18
18
B
52 67Right-handed alpha
Helix 19
19
B
80 89Right-handed alpha
Helix 20
20
B
90 92Right-handed 310
Helix 21
21
B
94 100Right-handed alpha
Helix 22
22
B
126 138Right-handed alpha
Helix 23
23
B
148 153Right-handed alpha
Helix 24
24
B
157 175Right-handed alpha
Helix 25
25
B
197 202Right-handed alpha
Helix 26
26
B
267 274Right-handed alpha
Helix 27
27
B
293 307Right-handed alpha
Helix 28
28
B
320 330Right-handed alpha
Helix 29
29
B
334 341Right-handed alpha
Helix 30
30
B
350 354Right-handed 310
Helix 31
31
B
355 371Right-handed alpha
Helix 32
32
B
380 385Right-handed alpha
Helix 33
33
B
388 406Right-handed alpha
Helix 34
34
C
28 33Right-handed alpha
Helix 35
35
C
52 67Right-handed alpha
Helix 36
36
C
80 89Right-handed alpha
Helix 37
37
C
94 101Right-handed alpha
Helix 38
38
C
117 121Right-handed 310
Helix 39
39
C
126 139Right-handed alpha
Helix 40
40
C
158 175Right-handed alpha
Helix 41
41
C
197 202Right-handed alpha
Helix 42
42
C
267 274Right-handed alpha
Helix 43
43
C
293 307Right-handed alpha
Helix 44
44
C
320 330Right-handed alpha
Helix 45
45
C
335 341Right-handed alpha
Helix 46
46
C
350 354Right-handed 310
Helix 47
47
C
355 371Right-handed alpha
Helix 48
48
C
388 406Right-handed alpha
Helix 49
49
C
430 434Right-handed 310
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There are 15 sheets in PDB entry 4O0M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
37 38anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 108first strand
Strand 2
A
72 76parallel
Strand 3
A
142 146parallel
Strand 4
A
178 184parallel
Strand 5
A
42 47parallel
Strand 6
A
204 211parallel
Strand 7
A
218 226anti-parallel
Strand 8
A
235 240anti-parallel
Strand 9
A
244 246anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
278 279anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 348first strand
Strand 2
A
312 316parallel
Strand 3
A
374 378parallel
Strand 4
A
409 415parallel
Strand 5
A
283 288parallel
Strand 6
A
436 445parallel
Strand 7
A
448 458anti-parallel
Strand 8
A
468 473anti-parallel
Strand 9
A
476 482anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 487first strand
Strand 2
A
495 496anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 22first strand
Strand 2
B
37 38anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 108first strand
Strand 2
B
72 76parallel
Strand 3
B
142 146parallel
Strand 4
B
178 184parallel
Strand 5
B
42 47parallel
Strand 6
B
204 211parallel
Strand 7
B
218 226anti-parallel
Strand 8
B
236 240anti-parallel
Strand 9
B
244 246anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
278 279anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 346first strand
Strand 2
B
312 316parallel
Strand 3
B
374 378parallel
Strand 4
B
409 415parallel
Strand 5
B
283 288parallel
Strand 6
B
436 445parallel
Strand 7
B
448 458anti-parallel
Strand 8
B
468 473anti-parallel
Strand 9
B
476 482anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 487first strand
Strand 2
B
495 496anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 22first strand
Strand 2
C
37 38anti-parallel
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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 108first strand
Strand 2
C
72 76parallel
Strand 3
C
142 146parallel
Strand 4
C
178 184parallel
Strand 5
C
42 47parallel
Strand 6
C
204 211parallel
Strand 7
C
218 226anti-parallel
Strand 8
C
235 240anti-parallel
Strand 9
C
244 246anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 263first strand
Strand 2
C
278 279anti-parallel
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There are 9 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
344 346first strand
Strand 2
C
312 315parallel
Strand 3
C
374 377parallel
Strand 4
C
409 415parallel
Strand 5
C
283 288parallel
Strand 6
C
436 445parallel
Strand 7
C
448 458anti-parallel
Strand 8
C
468 473anti-parallel
Strand 9
C
476 482anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
486 487first strand
Strand 2
C
495 496anti-parallel
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