Analysis of interatomic Contacts of Structural Units in PDB entry:
4O4L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4O4L entry

There are 3 chains in PDB entry 4O4L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 439
B
 MET 1ALA 438
C
 MET 1GLU 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are100 helices in PDB entry 4O4L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 29Right-handed alpha
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
72 81Right-handed alpha
Helix 4
4
A
83 87Right-handed 310
Helix 5
5
A
88 90Right-handed 310
Helix 6
6
A
102 108Right-handed alpha
Helix 7
7
A
110 128Right-handed alpha
Helix 8
8
A
143 161Right-handed alpha
Helix 9
9
A
182 195Right-handed alpha
Helix 10
10
A
196 198Right-handed 310
Helix 11
11
A
206 218Right-handed alpha
Helix 12
12
A
223 244Right-handed alpha
Helix 13
13
A
251 260Right-handed alpha
Helix 14
14
A
287 294Right-handed alpha
Helix 15
15
A
295 301Right-handed 310
Helix 16
16
A
306 310Right-handed 310
Helix 17
17
A
324 339Right-handed alpha
Helix 18
18
A
384 400Right-handed alpha
Helix 19
19
A
404 410Right-handed alpha
Helix 20
20
A
414 437Right-handed alpha
Helix 21
21
B
10 28Right-handed alpha
Helix 22
22
B
41 48Right-handed alpha
Helix 23
23
B
49 51Right-handed 310
Helix 24
24
B
72 81Right-handed alpha
Helix 25
25
B
83 87Right-handed 310
Helix 26
26
B
88 90Right-handed 310
Helix 27
27
B
102 108Right-handed alpha
Helix 28
28
B
109 128Right-handed alpha
Helix 29
29
B
144 161Right-handed alpha
Helix 30
30
B
174 178Right-handed 310
Helix 31
31
B
182 198Right-handed alpha
Helix 32
32
B
206 216Right-handed alpha
Helix 33
33
B
223 239Right-handed alpha
Helix 34
34
B
239 244Right-handed alpha
Helix 35
35
B
251 260Right-handed alpha
Helix 36
36
B
287 297Right-handed alpha
Helix 37
37
B
298 301Right-handed 310
Helix 38
38
B
306 310Right-handed 310
Helix 39
39
B
324 339Right-handed alpha
Helix 40
40
B
340 343Right-handed 310
Helix 41
41
B
384 400Right-handed alpha
Helix 42
42
B
405 410Right-handed alpha
Helix 43
43
B
414 437Right-handed alpha
Helix 44
44
C
10 29Right-handed alpha
Helix 45
45
C
47 51Right-handed 310
Helix 46
46
C
72 81Right-handed alpha
Helix 47
47
C
88 90Right-handed 310
Helix 48
48
C
102 108Right-handed alpha
Helix 49
49
C
110 113Right-handed 310
Helix 50
50
C
114 128Right-handed alpha
Helix 51
51
C
143 162Right-handed alpha
Helix 52
52
C
174 178Right-handed 310
Helix 53
53
C
182 195Right-handed alpha
Helix 54
54
C
206 217Right-handed alpha
Helix 55
55
C
223 244Right-handed alpha
Helix 56
56
C
251 260Right-handed alpha
Helix 57
57
C
277 282Right-handed alpha
Helix 58
58
C
287 295Right-handed alpha
Helix 59
59
C
296 301Right-handed 310
Helix 60
60
C
306 310Right-handed 310
Helix 61
61
C
324 339Right-handed alpha
Helix 62
62
C
384 400Right-handed alpha
Helix 63
63
C
405 410Right-handed alpha
Helix 64
64
C
414 437Right-handed alpha
Helix 65
65
D
10 28Right-handed alpha
Helix 66
66
D
41 48Right-handed alpha
Helix 67
67
D
49 51Right-handed 310
Helix 68
68
D
72 80Right-handed alpha
Helix 69
69
D
83 87Right-handed 310
Helix 70
70
D
88 90Right-handed 310
Helix 71
71
D
102 108Right-handed alpha
Helix 72
72
D
109 128Right-handed alpha
Helix 73
73
D
144 161Right-handed alpha
Helix 74
74
D
182 198Right-handed alpha
Helix 75
75
D
206 216Right-handed alpha
Helix 76
76
D
223 239Right-handed alpha
Helix 77
77
D
239 244Right-handed alpha
Helix 78
78
D
251 260Right-handed alpha
Helix 79
79
D
278 282Right-handed 310
Helix 80
80
D
287 296Right-handed alpha
Helix 81
81
D
297 301Right-handed 310
Helix 82
82
D
306 310Right-handed 310
Helix 83
83
D
324 339Right-handed alpha
Helix 84
84
D
340 343Right-handed 310
Helix 85
85
D
384 397Right-handed alpha
Helix 86
86
D
405 410Right-handed alpha
Helix 87
87
D
415 438Right-handed alpha
Helix 88
88
E
46 141Right-handed alpha
Helix 89
89
F
11 23Right-handed alpha
Helix 90
90
F
48 52Right-handed 310
Helix 91
91
F
68 73Right-handed alpha
Helix 92
92
F
73 83Right-handed alpha
Helix 93
93
F
165 170Right-handed alpha
Helix 94
94
F
172 176Right-handed 310
Helix 95
95
F
244 250Right-handed alpha
Helix 96
96
F
257 259Right-handed 310
Helix 97
97
F
264 275Right-handed alpha
Helix 98
98
F
282 298Right-handed alpha
Helix 99
99
F
298 303Right-handed alpha
Helix 100
100
F
342 354Right-handed alpha
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There are 15 sheets in PDB entry 4O4L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
4 9parallel
Strand 4
A
134 140parallel
Strand 5
A
165 172parallel
Strand 6
A
200 205parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
349 356parallel
Strand 5
E
17 25anti-parallel
Strand 6
E
7 14anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 172parallel
Strand 6
B
200 205parallel
Strand 7
B
267 273parallel
Strand 8
B
373 381anti-parallel
Strand 9
B
312 321anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
61 63anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
65 69parallel
Strand 3
C
4 9parallel
Strand 4
C
134 140parallel
Strand 5
C
165 172parallel
Strand 6
C
200 205parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 55first strand
Strand 2
C
61 63anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
269 273first strand
Strand 2
C
373 381anti-parallel
Strand 3
C
312 321anti-parallel
Strand 4
C
352 356parallel
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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 94first strand
Strand 2
D
65 69parallel
Strand 3
D
4 9parallel
Strand 4
D
134 140parallel
Strand 5
D
165 172parallel
Strand 6
D
200 205parallel
Strand 7
D
267 273parallel
Strand 8
D
373 381anti-parallel
Strand 9
D
312 321anti-parallel
Strand 10
D
351 356parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 56first strand
Strand 2
D
60 63anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
27 30first strand
Strand 2
F
2 6parallel
Strand 3
F
39 41parallel
Strand 4
F
61 62parallel
Strand 5
F
310 311parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
97 100first strand
Strand 2
F
180 183anti-parallel
Strand 3
F
150 151anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
191 192first strand
Strand 2
F
197 198anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
261 263first strand
Strand 2
F
220 222anti-parallel
Strand 3
F
200 207anti-parallel
Strand 4
F
313 321anti-parallel
Strand 5
F
327 333anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
261 263first strand
Strand 2
F
220 222anti-parallel
Strand 3
F
200 207anti-parallel
Strand 4
F
213 216anti-parallel
Strand 5
F
375 377anti-parallel
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