Analysis of interatomic Contacts of Structural Units in PDB entry:
4O6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4O6D entry

There are 2 chains in PDB entry 4O6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -6ALA 352
B
 UNK -24ALA 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4O6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-6 0Right-handed alpha
Helix 2
2
A
9 11Right-handed 310
Helix 3
3
A
27 30Right-handed 310
Helix 4
4
A
38 51Right-handed alpha
Helix 5
5
A
61 82Right-handed alpha
Helix 6
6
A
144 146Right-handed 310
Helix 7
7
A
180 183Right-handed 310
Helix 8
8
A
226 230Right-handed 310
Helix 9
9
A
237 241Right-handed 310
Helix 10
10
A
244 248Right-handed 310
Helix 11
11
B
38 52Right-handed alpha
Helix 12
12
B
61 82Right-handed alpha
Helix 13
13
B
144 146Right-handed 310
Helix 14
14
B
180 184Right-handed 310
Helix 15
15
B
226 230Right-handed 310
Helix 16
16
B
237 241Right-handed 310
Helix 17
17
B
244 248Right-handed 310
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There are 8 sheets in PDB entry 4O6D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 7first strand
Strand 2
A
12 22anti-parallel
Strand 3
B
12 22anti-parallel
Strand 4
B
1 7anti-parallel
Strand 5
A
1 7anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
165 171parallel
Strand 3
A
153 159anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
132 135parallel
Strand 3
A
56 57parallel
Strand 4
A
148 149parallel
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There are 16 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 299first strand
Strand 2
A
328 331anti-parallel
Strand 3
A
321 325anti-parallel
Strand 4
A
273 277anti-parallel
Strand 5
A
210 217anti-parallel
Strand 6
A
200 206anti-parallel
Strand 7
A
192 196anti-parallel
Strand 8
A
185 189anti-parallel
Strand 9
B
185 189anti-parallel
Strand 10
B
192 196anti-parallel
Strand 11
B
200 206anti-parallel
Strand 12
B
210 217anti-parallel
Strand 13
B
273 277anti-parallel
Strand 14
B
321 325anti-parallel
Strand 15
B
328 331anti-parallel
Strand 16
B
298 299anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
310 313parallel
Strand 3
A
335 337anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 36first strand
Strand 2
B
165 171parallel
Strand 3
B
153 159anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
132 135parallel
Strand 3
B
56 57parallel
Strand 4
B
148 149parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 287first strand
Strand 2
B
310 313parallel
Strand 3
B
335 337anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il