Analysis of interatomic Contacts of Structural Units in PDB entry:
4O6I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4O6I entry

There are 2 chains in PDB entry 4O6I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 357LEU 558
B
 GLN 355LEU 558
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4O6I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
359 370Right-handed alpha
Helix 2
2
A
371 373Right-handed 310
Helix 3
3
A
412 423Right-handed alpha
Helix 4
4
A
427 432Right-handed 310
Helix 5
5
A
437 446Right-handed alpha
Helix 6
6
A
456 467Right-handed alpha
Helix 7
7
A
480 485Right-handed alpha
Helix 8
8
A
487 496Right-handed alpha
Helix 9
9
A
497 499Right-handed 310
Helix 10
10
A
518 532Right-handed alpha
Helix 11
11
A
545 550Right-handed alpha
Helix 12
12
B
359 370Right-handed alpha
Helix 13
13
B
371 373Right-handed 310
Helix 14
14
B
412 423Right-handed alpha
Helix 15
15
B
427 432Right-handed 310
Helix 16
16
B
437 446Right-handed alpha
Helix 17
17
B
457 467Right-handed alpha
Helix 18
18
B
480 485Right-handed alpha
Helix 19
19
B
487 496Right-handed alpha
Helix 20
20
B
497 499Right-handed 310
Helix 21
21
B
518 532Right-handed alpha
Helix 22
22
B
545 550Right-handed alpha
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There are 6 sheets in PDB entry 4O6I. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 386first strand
Strand 2
A
389 396anti-parallel
Strand 3
A
402 407anti-parallel
Strand 4
A
541 542parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 454first strand
Strand 2
A
473 476parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 507first strand
Strand 2
A
513 514anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 384first strand
Strand 2
B
392 396anti-parallel
Strand 3
B
402 407anti-parallel
Strand 4
B
541 542parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
451 454first strand
Strand 2
B
473 476parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
506 507first strand
Strand 2
B
513 514anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il