Analysis of interatomic Contacts of Structural Units in PDB entry:
4O6L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4O6L entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 4O6L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 515ASP 674
A
 THR 686ILE 793
B
 ASN 515ILE 793
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4O6L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
561 578Right-handed alpha
Helix 2
2
A
609 614Right-handed alpha
Helix 3
3
A
620 641Right-handed alpha
Helix 4
4
A
649 651Right-handed 310
Helix 5
5
A
691 697Right-handed alpha
Helix 6
6
A
713 730Right-handed alpha
Helix 7
7
A
739 749Right-handed alpha
Helix 8
8
A
761 772Right-handed alpha
Helix 9
9
A
781 788Right-handed alpha
Helix 10
10
A
788 793Right-handed alpha
Helix 11
11
B
561 579Right-handed alpha
Helix 12
12
B
609 615Right-handed alpha
Helix 13
13
B
620 641Right-handed alpha
Helix 14
14
B
649 651Right-handed 310
Helix 15
15
B
691 697Right-handed alpha
Helix 16
16
B
713 730Right-handed alpha
Helix 17
17
B
739 749Right-handed alpha
Helix 18
18
B
761 772Right-handed alpha
Helix 19
19
B
781 787Right-handed alpha
Helix 20
20
B
788 793Right-handed alpha
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There are 5 sheets in PDB entry 4O6L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 520first strand
Strand 2
A
523 534anti-parallel
Strand 3
A
537 543anti-parallel
Strand 4
A
549 556anti-parallel
Strand 5
A
597 603anti-parallel
Strand 6
A
588 593anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 520first strand
Strand 2
A
523 534anti-parallel
Strand 3
A
672 673anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 608first strand
Strand 2
A
653 656anti-parallel
Strand 3
A
659 662anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
517 520first strand
Strand 2
B
523 533anti-parallel
Strand 3
B
537 543anti-parallel
Strand 4
B
549 556anti-parallel
Strand 5
B
597 602anti-parallel
Strand 6
B
588 593anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
607 608first strand
Strand 2
B
653 656anti-parallel
Strand 3
B
659 662anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il