Analysis of interatomic Contacts of Structural Units in PDB entry:
4O8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4O8P entry

There is 1 chain in PDB entry 4O8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 61ARG 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4O8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
121 128Right-handed 310
Helix 2
2
A
146 149Right-handed 310
Helix 3
3
A
225 227Right-handed 310
Helix 4
4
A
242 246Right-handed 310
Helix 5
5
A
330 333Right-handed 310
Helix 6
6
A
348 352Right-handed 310
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There are 5 sheets in PDB entry 4O8P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
355 361anti-parallel
Strand 3
A
335 340anti-parallel
Strand 4
A
314 318anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 94first strand
Strand 2
A
97 106anti-parallel
Strand 3
A
111 116anti-parallel
Strand 4
A
130 132anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 145first strand
Strand 2
A
150 156anti-parallel
Strand 3
A
162 167anti-parallel
Strand 4
A
180 183anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 201first strand
Strand 2
A
205 211anti-parallel
Strand 3
A
216 223anti-parallel
Strand 4
A
236 240anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 292first strand
Strand 2
A
274 281anti-parallel
Strand 3
A
261 268anti-parallel
Strand 4
A
248 255anti-parallel
Strand 5
A
328 329parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il