Analysis of interatomic Contacts of Structural Units in PDB entry:
4O8R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4O8R entry

There are 6 chains in PDB entry 4O8R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 5	ASP 224
B	ASP 7	LEU 225
C	MET 1	LEU 225
D	VAL 8	LYS 223
E	MET 9	LEU 225
F	MET 9	ALA 214

There are158 helices in PDB entry 4O8R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	11	13	Right-handed 310
Helix 2	2	A	23	35	Right-handed alpha
Helix 3	3	A	45	52	Right-handed alpha
Helix 4	4	A	53	64	Right-handed alpha
Helix 5	5	A	76	90	Right-handed alpha
Helix 6	6	A	102	117	Right-handed alpha
Helix 7	7	A	128	133	Right-handed 310
Helix 8	8	A	135	150	Right-handed alpha
Helix 9	9	A	160	172	Right-handed alpha
Helix 10	10	A	188	193	Right-handed alpha
Helix 11	11	A	202	207	Right-handed alpha
Helix 12	12	A	210	224	Right-handed alpha
Helix 13	13	B	11	13	Right-handed 310
Helix 14	14	B	23	34	Right-handed alpha
Helix 15	15	B	45	52	Right-handed alpha
Helix 16	16	B	53	64	Right-handed alpha
Helix 17	17	B	76	90	Right-handed alpha
Helix 18	18	B	102	117	Right-handed alpha
Helix 19	19	B	128	133	Right-handed 310
Helix 20	20	B	138	150	Right-handed alpha
Helix 21	21	B	160	172	Right-handed alpha
Helix 22	22	B	188	193	Right-handed alpha
Helix 23	23	B	202	207	Right-handed alpha
Helix 24	24	B	210	220	Right-handed alpha
Helix 25	25	C	11	13	Right-handed 310
Helix 26	26	C	23	34	Right-handed alpha
Helix 27	27	C	45	52	Right-handed alpha
Helix 28	28	C	53	64	Right-handed alpha
Helix 29	29	C	76	90	Right-handed alpha
Helix 30	30	C	102	117	Right-handed alpha
Helix 31	31	C	128	133	Right-handed 310
Helix 32	32	C	134	149	Right-handed alpha
Helix 33	33	C	160	172	Right-handed alpha
Helix 34	34	C	188	193	Right-handed alpha
Helix 35	35	C	202	207	Right-handed alpha
Helix 36	36	C	210	222	Right-handed alpha
Helix 37	37	D	11	13	Right-handed 310
Helix 38	38	D	23	34	Right-handed alpha
Helix 39	39	D	45	52	Right-handed alpha
Helix 40	40	D	53	64	Right-handed alpha
Helix 41	41	D	76	90	Right-handed alpha
Helix 42	42	D	102	117	Right-handed alpha
Helix 43	43	D	128	133	Right-handed 310
Helix 44	44	D	134	150	Right-handed alpha
Helix 45	45	D	160	172	Right-handed alpha
Helix 46	46	D	188	193	Right-handed alpha
Helix 47	47	D	202	207	Right-handed alpha
Helix 48	48	D	210	222	Right-handed alpha
Helix 49	49	E	11	13	Right-handed 310
Helix 50	50	E	23	35	Right-handed alpha
Helix 51	51	E	45	52	Right-handed alpha
Helix 52	52	E	53	64	Right-handed alpha
Helix 53	53	E	76	90	Right-handed alpha
Helix 54	54	E	102	117	Right-handed alpha
Helix 55	55	E	128	133	Right-handed 310
Helix 56	56	E	138	150	Right-handed alpha
Helix 57	57	E	160	172	Right-handed alpha
Helix 58	58	E	188	193	Right-handed alpha
Helix 59	59	E	202	207	Right-handed alpha
Helix 60	60	E	210	222	Right-handed alpha
Helix 61	61	F	11	13	Right-handed 310
Helix 62	62	F	23	34	Right-handed alpha
Helix 63	63	F	45	52	Right-handed alpha
Helix 64	64	F	53	63	Right-handed alpha
Helix 65	65	F	76	90	Right-handed alpha
Helix 66	66	F	102	117	Right-handed alpha
Helix 67	67	F	128	133	Right-handed 310
Helix 68	68	F	134	149	Right-handed alpha
Helix 69	69	F	160	172	Right-handed alpha
Helix 70	70	F	188	193	Right-handed alpha
Helix 71	71	F	202	207	Right-handed alpha
Helix 72	72	F	210	221	Right-handed alpha
Helix 73	73	G	11	13	Right-handed 310
Helix 74	74	G	23	34	Right-handed alpha
Helix 75	75	G	45	52	Right-handed alpha
Helix 76	76	G	53	63	Right-handed alpha
Helix 77	77	G	76	90	Right-handed alpha
Helix 78	78	G	102	117	Right-handed alpha
Helix 79	79	G	128	133	Right-handed 310
Helix 80	80	G	134	150	Right-handed alpha
Helix 81	81	G	160	172	Right-handed alpha
Helix 82	82	G	188	193	Right-handed alpha
Helix 83	83	G	202	207	Right-handed alpha
Helix 84	84	G	210	221	Right-handed alpha
Helix 85	85	H	11	13	Right-handed 310
Helix 86	86	H	23	34	Right-handed alpha
Helix 87	87	H	45	52	Right-handed alpha
Helix 88	88	H	54	63	Right-handed alpha
Helix 89	89	H	76	90	Right-handed alpha
Helix 90	90	H	102	117	Right-handed alpha
Helix 91	91	H	128	133	Right-handed 310
Helix 92	92	H	135	150	Right-handed alpha
Helix 93	93	H	160	172	Right-handed alpha
Helix 94	94	H	188	193	Right-handed alpha
Helix 95	95	H	202	207	Right-handed alpha
Helix 96	96	H	210	222	Right-handed alpha
Helix 97	97	I	23	34	Right-handed alpha
Helix 98	98	I	45	52	Right-handed alpha
Helix 99	99	I	53	64	Right-handed alpha
Helix 100	100	I	76	90	Right-handed alpha
Helix 101	101	I	102	117	Right-handed alpha
Helix 102	102	I	128	133	Right-handed 310
Helix 103	103	I	135	137	Right-handed 310
Helix 104	104	I	138	150	Right-handed alpha
Helix 105	105	I	163	172	Right-handed alpha
Helix 106	106	I	190	195	Right-handed 310
Helix 107	107	I	202	207	Right-handed alpha
Helix 108	108	I	210	220	Right-handed alpha
Helix 109	109	J	11	13	Right-handed 310
Helix 110	110	J	23	34	Right-handed alpha
Helix 111	111	J	45	52	Right-handed alpha
Helix 112	112	J	53	64	Right-handed alpha
Helix 113	113	J	76	90	Right-handed alpha
Helix 114	114	J	102	117	Right-handed alpha
Helix 115	115	J	128	133	Right-handed 310
Helix 116	116	J	138	149	Right-handed alpha
Helix 117	117	J	161	172	Right-handed alpha
Helix 118	118	J	188	193	Right-handed alpha
Helix 119	119	J	202	207	Right-handed alpha
Helix 120	120	J	210	221	Right-handed alpha
Helix 121	121	K	11	13	Right-handed 310
Helix 122	122	K	24	35	Right-handed alpha
Helix 123	123	K	45	52	Right-handed alpha
Helix 124	124	K	53	64	Right-handed alpha
Helix 125	125	K	76	90	Right-handed alpha
Helix 126	126	K	102	117	Right-handed alpha
Helix 127	127	K	128	133	Right-handed 310
Helix 128	128	K	138	149	Right-handed alpha
Helix 129	129	K	160	172	Right-handed alpha
Helix 130	130	K	188	193	Right-handed alpha
Helix 131	131	K	202	207	Right-handed alpha
Helix 132	132	K	210	223	Right-handed alpha
Helix 133	133	L	11	13	Right-handed 310
Helix 134	134	L	23	34	Right-handed alpha
Helix 135	135	L	45	52	Right-handed alpha
Helix 136	136	L	53	64	Right-handed alpha
Helix 137	137	L	76	90	Right-handed alpha
Helix 138	138	L	102	117	Right-handed alpha
Helix 139	139	L	128	133	Right-handed 310
Helix 140	140	L	135	137	Right-handed 310
Helix 141	141	L	138	150	Right-handed alpha
Helix 142	142	L	160	167	Right-handed alpha
Helix 143	143	L	167	172	Right-handed alpha
Helix 144	144	L	188	194	Right-handed alpha
Helix 145	145	L	202	207	Right-handed alpha
Helix 146	146	L	210	220	Right-handed alpha
Helix 147	147	M	11	13	Right-handed 310
Helix 148	148	M	23	34	Right-handed alpha
Helix 149	149	M	45	52	Right-handed alpha
Helix 150	150	M	53	64	Right-handed alpha
Helix 151	151	M	76	90	Right-handed alpha
Helix 152	152	M	102	117	Right-handed alpha
Helix 153	153	M	128	133	Right-handed 310
Helix 154	154	M	134	150	Right-handed alpha
Helix 155	155	M	160	172	Right-handed alpha
Helix 156	156	M	188	193	Right-handed alpha
Helix 157	157	M	202	207	Right-handed alpha
Helix 158	158	M	210	221	Right-handed alpha

There are 13 sheets in PDB entry 4O8R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	19	first strand
Strand 2	A	40	44	parallel
Strand 3	A	66	73	parallel
Strand 4	A	94	98	parallel
Strand 5	A	119	123	parallel
Strand 6	A	153	155	parallel
Strand 7	A	176	179	parallel
Strand 8	A	198	201	parallel
Strand 9	A	15	19	parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	19	first strand
Strand 2	B	40	44	parallel
Strand 3	B	66	73	parallel
Strand 4	B	94	98	parallel
Strand 5	B	119	123	parallel
Strand 6	B	153	155	parallel
Strand 7	B	176	179	parallel
Strand 8	B	198	201	parallel
Strand 9	B	15	19	parallel

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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	19	first strand
Strand 2	C	40	44	parallel
Strand 3	C	66	73	parallel
Strand 4	C	94	98	parallel
Strand 5	C	119	123	parallel
Strand 6	C	153	155	parallel
Strand 7	C	176	179	parallel
Strand 8	C	198	201	parallel
Strand 9	C	15	19	parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	19	first strand
Strand 2	D	40	44	parallel
Strand 3	D	66	73	parallel
Strand 4	D	94	98	parallel
Strand 5	D	119	123	parallel
Strand 6	D	153	155	parallel
Strand 7	D	176	182	parallel
Strand 8	D	198	201	parallel
Strand 9	D	15	19	parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	19	first strand
Strand 2	E	40	44	parallel
Strand 3	E	66	73	parallel
Strand 4	E	94	98	parallel
Strand 5	E	119	123	parallel
Strand 6	E	153	155	parallel
Strand 7	E	176	179	parallel
Strand 8	E	198	201	parallel
Strand 9	E	15	19	parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	19	first strand
Strand 2	F	40	44	parallel
Strand 3	F	66	73	parallel
Strand 4	F	94	98	parallel
Strand 5	F	119	123	parallel
Strand 6	F	153	155	parallel
Strand 7	F	176	180	parallel
Strand 8	F	198	201	parallel
Strand 9	F	15	19	parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	19	first strand
Strand 2	G	40	44	parallel
Strand 3	G	66	73	parallel
Strand 4	G	94	98	parallel
Strand 5	G	119	123	parallel
Strand 6	G	153	155	parallel
Strand 7	G	176	179	parallel
Strand 8	G	198	201	parallel
Strand 9	G	15	19	parallel

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	15	19	first strand
Strand 2	H	40	44	parallel
Strand 3	H	66	73	parallel
Strand 4	H	94	98	parallel
Strand 5	H	119	123	parallel
Strand 6	H	153	155	parallel
Strand 7	H	176	182	parallel
Strand 8	H	198	201	parallel
Strand 9	H	15	19	parallel

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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	16	18	first strand
Strand 2	I	40	44	parallel
Strand 3	I	66	73	parallel
Strand 4	I	94	98	parallel
Strand 5	I	119	123	parallel
Strand 6	I	153	155	parallel
Strand 7	I	176	179	parallel
Strand 8	I	198	201	parallel
Strand 9	I	16	18	parallel

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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	15	19	first strand
Strand 2	J	40	44	parallel
Strand 3	J	66	73	parallel
Strand 4	J	94	98	parallel
Strand 5	J	119	123	parallel
Strand 6	J	153	155	parallel
Strand 7	J	176	180	parallel
Strand 8	J	198	201	parallel
Strand 9	J	15	19	parallel

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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	15	19	first strand
Strand 2	K	40	44	parallel
Strand 3	K	66	73	parallel
Strand 4	K	94	98	parallel
Strand 5	K	119	123	parallel
Strand 6	K	153	155	parallel
Strand 7	K	176	179	parallel
Strand 8	K	198	201	parallel
Strand 9	K	15	19	parallel

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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	15	19	first strand
Strand 2	L	40	44	parallel
Strand 3	L	66	73	parallel
Strand 4	L	94	98	parallel
Strand 5	L	119	123	parallel
Strand 6	L	153	155	parallel
Strand 7	L	176	179	parallel
Strand 8	L	198	201	parallel
Strand 9	L	15	19	parallel

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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	15	19	first strand
Strand 2	M	40	44	parallel
Strand 3	M	66	73	parallel
Strand 4	M	94	98	parallel
Strand 5	M	119	123	parallel
Strand 6	M	153	155	parallel
Strand 7	M	176	182	parallel
Strand 8	M	198	201	parallel
Strand 9	M	15	19	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4O8R

Analysis of interatomic Contacts of Structural Units in PDB entry:
4O8R