Analysis of interatomic Contacts of Structural Units in PDB entry:
4O8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4O8T entry

There are 6 chains in PDB entry 4O8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 75TYR 247
B
 LYS 91TYR 247
C
 GLY 73TYR 247
D
 LEU 74TYR 247
E
 LEU 74TYR 247
F
 LEU 74TYR 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 4O8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
75 89Right-handed alpha
Helix 2
2
A
101 104Right-handed 310
Helix 3
3
A
116 121Right-handed alpha
Helix 4
4
A
148 152Right-handed 310
Helix 5
5
A
154 160Right-handed 310
Helix 6
6
A
190 194Right-handed 310
Helix 7
7
A
229 231Right-handed 310
Helix 8
8
A
232 240Right-handed alpha
Helix 9
9
B
101 104Right-handed 310
Helix 10
10
B
114 120Right-handed 310
Helix 11
11
B
148 152Right-handed 310
Helix 12
12
B
154 160Right-handed 310
Helix 13
13
B
190 194Right-handed 310
Helix 14
14
B
229 231Right-handed 310
Helix 15
15
B
232 240Right-handed alpha
Helix 16
16
C
77 89Right-handed alpha
Helix 17
17
C
101 104Right-handed 310
Helix 18
18
C
116 121Right-handed alpha
Helix 19
19
C
148 152Right-handed 310
Helix 20
20
C
154 160Right-handed 310
Helix 21
21
C
229 231Right-handed 310
Helix 22
22
C
232 240Right-handed alpha
Helix 23
23
D
75 90Right-handed alpha
Helix 24
24
D
101 104Right-handed 310
Helix 25
25
D
116 120Right-handed 310
Helix 26
26
D
148 152Right-handed 310
Helix 27
27
D
154 160Right-handed 310
Helix 28
28
D
190 194Right-handed 310
Helix 29
29
D
229 231Right-handed 310
Helix 30
30
D
232 239Right-handed alpha
Helix 31
31
E
75 90Right-handed alpha
Helix 32
32
E
101 104Right-handed 310
Helix 33
33
E
114 121Right-handed alpha
Helix 34
34
E
148 152Right-handed 310
Helix 35
35
E
154 160Right-handed 310
Helix 36
36
E
190 194Right-handed 310
Helix 37
37
E
229 231Right-handed 310
Helix 38
38
E
232 239Right-handed alpha
Helix 39
39
F
75 89Right-handed alpha
Helix 40
40
F
101 104Right-handed 310
Helix 41
41
F
116 121Right-handed alpha
Helix 42
42
F
148 152Right-handed 310
Helix 43
43
F
154 160Right-handed 310
Helix 44
44
F
190 194Right-handed 310
Helix 45
45
F
229 231Right-handed 310
Helix 46
46
F
232 239Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 4O8T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 100first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
122 124parallel
Strand 4
A
135 141anti-parallel
Strand 5
B
201 207parallel
Strand 6
B
215 227anti-parallel
Strand 7
A
173 185anti-parallel
Strand 8
A
165 169anti-parallel
Strand 9
A
94 100anti-parallel
Back to list of sheets
Back to top of page

There are 18 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 185first strand
Strand 2
A
215 227anti-parallel
Strand 3
A
201 206anti-parallel
Strand 4
B
135 140parallel
Strand 5
B
122 124anti-parallel
Strand 6
B
105 110parallel
Strand 7
B
94 100anti-parallel
Strand 8
B
165 169anti-parallel
Strand 9
B
173 185anti-parallel
Strand 10
D
173 185anti-parallel
Strand 11
D
165 169anti-parallel
Strand 12
D
96 100anti-parallel
Strand 13
D
105 110anti-parallel
Strand 14
D
122 124parallel
Strand 15
D
135 140anti-parallel
Strand 16
C
201 206parallel
Strand 17
C
215 227anti-parallel
Strand 18
D
173 185anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 100first strand
Strand 2
C
105 110anti-parallel
Strand 3
C
122 124parallel
Strand 4
C
135 141anti-parallel
Strand 5
D
201 207parallel
Strand 6
D
215 227anti-parallel
Strand 7
C
173 185anti-parallel
Strand 8
C
165 169anti-parallel
Strand 9
C
96 100anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
96 100first strand
Strand 2
E
105 110anti-parallel
Strand 3
E
122 124parallel
Strand 4
E
135 141anti-parallel
Strand 5
F
201 207parallel
Strand 6
F
215 227anti-parallel
Strand 7
E
173 185anti-parallel
Strand 8
E
165 169anti-parallel
Strand 9
E
96 100anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
201 206first strand
Strand 2
E
215 227anti-parallel
Strand 3
F
173 185anti-parallel
Strand 4
F
165 169anti-parallel
Strand 5
F
96 100anti-parallel
Strand 6
F
105 110anti-parallel
Strand 7
F
122 124parallel
Strand 8
F
135 140anti-parallel
Strand 9
E
201 206parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il