Analysis of interatomic Contacts of Structural Units in PDB entry:
4O8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4O8V entry

There are 2 chains in PDB entry 4O8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 79ARG 370
B
 ARG 78ARG 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 4O8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 95Right-handed 310
Helix 2
2
A
100 122Right-handed alpha
Helix 3
3
A
133 138Right-handed alpha
Helix 4
4
A
139 142Right-handed 310
Helix 5
5
A
148 152Right-handed 310
Helix 6
6
A
153 165Right-handed alpha
Helix 7
7
A
172 180Right-handed alpha
Helix 8
8
A
194 212Right-handed alpha
Helix 9
9
A
234 240Right-handed 310
Helix 10
10
A
243 250Right-handed 310
Helix 11
11
A
287 292Right-handed alpha
Helix 12
12
A
293 295Right-handed 310
Helix 13
13
A
296 306Right-handed alpha
Helix 14
14
A
319 328Right-handed alpha
Helix 15
15
A
329 335Right-handed alpha
Helix 16
16
A
347 349Right-handed 310
Helix 17
17
A
359 368Right-handed alpha
Helix 18
18
B
93 95Right-handed 310
Helix 19
19
B
100 122Right-handed alpha
Helix 20
20
B
133 138Right-handed alpha
Helix 21
21
B
139 142Right-handed 310
Helix 22
22
B
148 152Right-handed 310
Helix 23
23
B
153 165Right-handed alpha
Helix 24
24
B
172 179Right-handed alpha
Helix 25
25
B
180 182Right-handed 310
Helix 26
26
B
194 212Right-handed alpha
Helix 27
27
B
234 240Right-handed 310
Helix 28
28
B
246 250Right-handed 310
Helix 29
29
B
287 292Right-handed alpha
Helix 30
30
B
293 295Right-handed 310
Helix 31
31
B
296 306Right-handed alpha
Helix 32
32
B
319 328Right-handed alpha
Helix 33
33
B
329 335Right-handed alpha
Helix 34
34
B
347 349Right-handed 310
Helix 35
35
B
359 368Right-handed alpha
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There are 6 sheets in PDB entry 4O8V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
89 91anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 131first strand
Strand 2
A
339 345parallel
Strand 3
A
282 285parallel
Strand 4
A
310 311parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 232first strand
Strand 2
A
254 263anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
89 91anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 131first strand
Strand 2
B
339 345parallel
Strand 3
B
282 285parallel
Strand 4
B
309 311parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 232first strand
Strand 2
B
254 263anti-parallel
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