Analysis of interatomic Contacts of Structural Units in PDB entry:
4O8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4O8X entry

There are 2 chains in PDB entry 4O8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 182
B
 LYS 24GLN 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4O8X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 25Right-handed alpha
Helix 2
2
A
69 84Right-handed alpha
Helix 3
3
A
102 111Right-handed alpha
Helix 4
4
A
164 175Right-handed alpha
Helix 5
5
A
175 182Right-handed alpha
Helix 6
6
B
31 45Right-handed alpha
Helix 7
7
B
79 83Right-handed 310
Helix 8
8
B
84 97Right-handed alpha
Helix 9
9
B
119 133Right-handed alpha
Helix 10
10
B
206 214Right-handed alpha
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There are 3 sheets in PDB entry 4O8X. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 157first strand
Strand 2
A
134 141anti-parallel
Strand 3
A
119 123anti-parallel
Strand 4
A
88 94parallel
Strand 5
A
34 40anti-parallel
Strand 6
A
45 53anti-parallel
Strand 7
A
7 10parallel
Strand 8
A
159 161parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
62 68anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 198first strand
Strand 2
B
153 158anti-parallel
Strand 3
B
137 141anti-parallel
Strand 4
B
103 110parallel
Strand 5
B
50 59anti-parallel
Strand 6
B
62 70anti-parallel
Strand 7
B
26 30parallel
Strand 8
B
200 204parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il