Analysis of interatomic Contacts of Structural Units in PDB entry:
4OAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OAG entry

There are 2 chains in PDB entry 4OAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 134THR 463
B
 SER 134THR 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 4OAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
134 146Right-handed alpha
Helix 2
2
A
150 174Right-handed alpha
Helix 3
3
A
221 223Right-handed 310
Helix 4
4
A
246 250Right-handed 310
Helix 5
5
A
258 270Right-handed alpha
Helix 6
6
A
271 274Right-handed 310
Helix 7
7
A
275 283Right-handed alpha
Helix 8
8
A
330 334Right-handed 310
Helix 9
9
A
341 357Right-handed alpha
Helix 10
10
A
359 374Right-handed alpha
Helix 11
11
A
375 378Right-handed 310
Helix 12
12
A
381 396Right-handed alpha
Helix 13
13
A
400 402Right-handed 310
Helix 14
14
A
403 422Right-handed alpha
Helix 15
15
A
439 454Right-handed alpha
Helix 16
16
A
456 461Right-handed alpha
Helix 17
17
B
135 146Right-handed alpha
Helix 18
18
B
150 176Right-handed alpha
Helix 19
19
B
221 223Right-handed 310
Helix 20
20
B
246 250Right-handed 310
Helix 21
21
B
258 270Right-handed alpha
Helix 22
22
B
277 283Right-handed alpha
Helix 23
23
B
341 357Right-handed alpha
Helix 24
24
B
359 374Right-handed alpha
Helix 25
25
B
375 378Right-handed 310
Helix 26
26
B
381 396Right-handed alpha
Helix 27
27
B
400 402Right-handed 310
Helix 28
28
B
403 422Right-handed alpha
Helix 29
29
B
433 438Right-handed 310
Helix 30
30
B
439 454Right-handed alpha
Helix 31
31
B
455 462Right-handed 310
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There are 6 sheets in PDB entry 4OAG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
201 207anti-parallel
Strand 3
A
306 318parallel
Strand 4
A
321 324anti-parallel
Strand 5
A
337 339anti-parallel
Strand 6
A
230 235anti-parallel
Strand 7
A
215 219anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
201 207anti-parallel
Strand 3
A
306 318parallel
Strand 4
A
297 303anti-parallel
Strand 5
A
286 289anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
256 257anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 187first strand
Strand 2
B
201 208anti-parallel
Strand 3
B
306 318parallel
Strand 4
B
321 324anti-parallel
Strand 5
B
337 339anti-parallel
Strand 6
B
230 235anti-parallel
Strand 7
B
215 219anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 187first strand
Strand 2
B
201 208anti-parallel
Strand 3
B
306 318parallel
Strand 4
B
297 303anti-parallel
Strand 5
B
286 289anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
B
256 257anti-parallel
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