Analysis of interatomic Contacts of Structural Units in PDB entry:
4ODB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ODB entry

There are 6 chains in PDB entry 4ODB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 308VAL 469
B
LEU 308VAL 469
C
LEU 308VAL 469
D
SER 28LEU 129
E
SER 28LEU 129
F
SER 28LEU 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4ODB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
328 332Right-handed 310
Helix 2
2
A
396 401Right-handed 310
Helix 3
3
B
327 332Right-handed 310
Helix 4
4
B
396 401Right-handed 310
Helix 5
5
C
328 332Right-handed 310
Helix 6
6
C
396 401Right-handed 310
Helix 7
7
D
81 84Right-handed 310
Helix 8
8
D
100 104Right-handed 310
Helix 9
9
E
100 104Right-handed 310
Helix 10
10
F
100 104Right-handed 310
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There are 14 sheets in PDB entry 4ODB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
315 318first strand
Strand 2
A
323 326anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
372 375first strand
Strand 2
A
455 458anti-parallel
Strand 3
A
410 419anti-parallel
Strand 4
A
424 437anti-parallel
Strand 5
A
440 447anti-parallel
Strand 6
A
382 386anti-parallel
Strand 7
A
333 345anti-parallel
Strand 8
A
348 361anti-parallel
Strand 9
A
364 369anti-parallel
Strand 10
A
461 466anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
310 311first strand
Strand 2
C
323 326parallel
Strand 3
C
315 318anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
372 375first strand
Strand 2
B
455 458anti-parallel
Strand 3
B
411 419anti-parallel
Strand 4
B
424 437anti-parallel
Strand 5
B
440 447anti-parallel
Strand 6
B
381 386anti-parallel
Strand 7
B
333 345anti-parallel
Strand 8
B
348 361anti-parallel
Strand 9
B
364 369anti-parallel
Strand 10
B
461 466anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
372 375first strand
Strand 2
C
455 458anti-parallel
Strand 3
C
411 419anti-parallel
Strand 4
C
424 437anti-parallel
Strand 5
C
440 448anti-parallel
Strand 6
C
381 386anti-parallel
Strand 7
C
333 345anti-parallel
Strand 8
C
348 361anti-parallel
Strand 9
C
364 369anti-parallel
Strand 10
C
461 466anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
30 32first strand
Strand 2
D
51 53anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
37 41first strand
Strand 2
D
119 129parallel
Strand 3
D
105 113anti-parallel
Strand 4
D
58 66anti-parallel
Strand 5
D
69 75anti-parallel
Strand 6
D
78 79anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
46 49first strand
Strand 2
D
93 96anti-parallel
Strand 3
D
87 90anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
30 32first strand
Strand 2
E
51 53anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
37 41first strand
Strand 2
E
119 129parallel
Strand 3
E
105 113anti-parallel
Strand 4
E
58 66anti-parallel
Strand 5
E
69 75anti-parallel
Strand 6
E
78 79anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
46 49first strand
Strand 2
E
93 96anti-parallel
Strand 3
E
87 90anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
30 32first strand
Strand 2
F
51 53anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
37 41first strand
Strand 2
F
119 129parallel
Strand 3
F
105 113anti-parallel
Strand 4
F
58 66anti-parallel
Strand 5
F
69 75anti-parallel
Strand 6
F
78 79anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
46 49first strand
Strand 2
F
93 96anti-parallel
Strand 3
F
87 90anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il