Analysis of interatomic Contacts of Structural Units in PDB entry:
4ODI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ODI entry

There are 4 chains in PDB entry 4ODI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 12ALA 257
B
 ALA 15ALA 259
C
 ALA 15ALA 257
D
 ALA 17GLU 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 4ODI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 34Right-handed alpha
Helix 2
2
A
46 63Right-handed alpha
Helix 3
3
A
75 90Right-handed alpha
Helix 4
4
A
100 103Right-handed 310
Helix 5
5
A
107 111Right-handed 310
Helix 6
6
A
114 123Right-handed alpha
Helix 7
7
A
123 133Right-handed alpha
Helix 8
8
A
148 156Right-handed 310
Helix 9
9
A
159 163Right-handed 310
Helix 10
10
A
168 183Right-handed alpha
Helix 11
11
A
183 190Right-handed alpha
Helix 12
12
A
199 211Right-handed alpha
Helix 13
13
A
216 220Right-handed 310
Helix 14
14
A
247 257Right-handed alpha
Helix 15
15
B
29 34Right-handed alpha
Helix 16
16
B
46 63Right-handed alpha
Helix 17
17
B
75 90Right-handed alpha
Helix 18
18
B
100 103Right-handed 310
Helix 19
19
B
107 111Right-handed 310
Helix 20
20
B
114 123Right-handed alpha
Helix 21
21
B
123 133Right-handed alpha
Helix 22
22
B
148 156Right-handed 310
Helix 23
23
B
159 163Right-handed 310
Helix 24
24
B
168 183Right-handed alpha
Helix 25
25
B
183 190Right-handed alpha
Helix 26
26
B
199 211Right-handed alpha
Helix 27
27
B
216 220Right-handed 310
Helix 28
28
B
247 258Right-handed alpha
Helix 29
29
C
29 34Right-handed alpha
Helix 30
30
C
46 63Right-handed alpha
Helix 31
31
C
75 90Right-handed alpha
Helix 32
32
C
100 103Right-handed 310
Helix 33
33
C
107 111Right-handed 310
Helix 34
34
C
114 123Right-handed alpha
Helix 35
35
C
123 133Right-handed alpha
Helix 36
36
C
148 156Right-handed 310
Helix 37
37
C
159 163Right-handed 310
Helix 38
38
C
168 183Right-handed alpha
Helix 39
39
C
183 190Right-handed alpha
Helix 40
40
C
199 211Right-handed alpha
Helix 41
41
C
216 220Right-handed 310
Helix 42
42
C
247 257Right-handed alpha
Helix 43
43
D
29 34Right-handed alpha
Helix 44
44
D
46 63Right-handed alpha
Helix 45
45
D
75 90Right-handed alpha
Helix 46
46
D
100 103Right-handed 310
Helix 47
47
D
107 111Right-handed 310
Helix 48
48
D
114 123Right-handed alpha
Helix 49
49
D
123 133Right-handed alpha
Helix 50
50
D
148 156Right-handed 310
Helix 51
51
D
159 163Right-handed 310
Helix 52
52
D
168 183Right-handed alpha
Helix 53
53
D
183 190Right-handed alpha
Helix 54
54
D
199 211Right-handed alpha
Helix 55
55
D
216 220Right-handed 310
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There are 4 sheets in PDB entry 4ODI. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
69 72parallel
Strand 3
A
194 198parallel
Strand 4
A
19 25parallel
Strand 5
A
229 233anti-parallel
Strand 6
A
239 244anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
69 72parallel
Strand 3
B
194 198parallel
Strand 4
B
19 25parallel
Strand 5
B
229 233anti-parallel
Strand 6
B
239 244anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 98first strand
Strand 2
C
69 72parallel
Strand 3
C
194 198parallel
Strand 4
C
19 25parallel
Strand 5
C
229 233anti-parallel
Strand 6
C
239 244anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
96 98first strand
Strand 2
D
69 72parallel
Strand 3
D
194 198parallel
Strand 4
D
19 25parallel
Strand 5
D
229 233anti-parallel
Strand 6
D
239 244anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il