Analysis of interatomic Contacts of Structural Units in PDB entry:
4ODM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ODM entry

There are 13 chains in PDB entry 4ODM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 150
B
 MET 1HIS 149
C
 MET 1LYS 153
D
 MET 1LEU 150
E
 ALA 23PHE 32
F
 PRO 25ALA 34
G
 MET 27PHE 32
H
 PRO 25ALA 34
I
 ALA 23ALA 34
J
 PRO 25GLY 33
K
 ARG 21ALA 34
L
 ASN 24ALA 34
M
 PRO 29PHE 32
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4ODM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 45Right-handed alpha
Helix 2
2
A
58 62Right-handed 310
Helix 3
3
A
67 69Right-handed 310
Helix 4
4
A
77 79Right-handed 310
Helix 5
5
A
139 146Right-handed alpha
Helix 6
6
B
37 45Right-handed alpha
Helix 7
7
B
58 62Right-handed 310
Helix 8
8
B
67 69Right-handed 310
Helix 9
9
B
77 79Right-handed 310
Helix 10
10
B
139 146Right-handed alpha
Helix 11
11
C
37 45Right-handed alpha
Helix 12
12
C
58 62Right-handed 310
Helix 13
13
C
67 69Right-handed 310
Helix 14
14
C
77 79Right-handed 310
Helix 15
15
C
139 146Right-handed alpha
Helix 16
16
D
37 45Right-handed alpha
Helix 17
17
D
58 62Right-handed 310
Helix 18
18
D
67 69Right-handed 310
Helix 19
19
D
77 79Right-handed 310
Helix 20
20
D
139 146Right-handed alpha
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There are 8 sheets in PDB entry 4ODM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 30first strand
Strand 2
A
7 17anti-parallel
Strand 3
A
126 137anti-parallel
Strand 4
A
52 57anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 75first strand
Strand 2
A
112 116anti-parallel
Strand 3
A
100 109anti-parallel
Strand 4
A
90 94anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 30first strand
Strand 2
B
7 17anti-parallel
Strand 3
B
126 137anti-parallel
Strand 4
B
52 57anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 75first strand
Strand 2
B
112 116anti-parallel
Strand 3
B
100 109anti-parallel
Strand 4
B
90 94anti-parallel
Strand 5
H
32 33anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 30first strand
Strand 2
C
7 17anti-parallel
Strand 3
C
126 137anti-parallel
Strand 4
C
52 57anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 75first strand
Strand 2
C
112 116anti-parallel
Strand 3
C
100 109anti-parallel
Strand 4
C
90 94anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 30first strand
Strand 2
D
7 17anti-parallel
Strand 3
D
126 137anti-parallel
Strand 4
D
52 57anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
71 75first strand
Strand 2
D
112 116anti-parallel
Strand 3
D
100 109anti-parallel
Strand 4
D
90 94anti-parallel
Strand 5
L
32 33anti-parallel
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