Analysis of interatomic Contacts of Structural Units in PDB entry:
4OEJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OEJ entry

There is 1 chain in PDB entry 4OEJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 55ASP 519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4OEJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 61Right-handed alpha
Helix 2
2
A
63 72Right-handed alpha
Helix 3
3
A
119 124Right-handed alpha
Helix 4
4
A
128 143Right-handed alpha
Helix 5
5
A
189 201Right-handed alpha
Helix 6
6
A
204 220Right-handed alpha
Helix 7
7
A
246 266Right-handed alpha
Helix 8
8
A
298 302Right-handed 310
Helix 9
9
A
304 312Right-handed alpha
Helix 10
10
A
313 318Right-handed 310
Helix 11
11
A
330 333Right-handed 310
Helix 12
12
A
334 345Right-handed alpha
Helix 13
13
A
444 448Right-handed 310
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There are 9 sheets in PDB entry 4OEJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
84 87anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
157 174anti-parallel
Strand 3
A
222 242anti-parallel
Strand 4
A
287 295anti-parallel
Strand 5
A
276 281anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 114first strand
Strand 2
A
157 174anti-parallel
Strand 3
A
222 242anti-parallel
Strand 4
A
319 328anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 396first strand
Strand 2
A
348 353anti-parallel
Strand 3
A
516 518parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 357first strand
Strand 2
A
369 371anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 409first strand
Strand 2
A
450 451anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 413first strand
Strand 2
A
421 423anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 458first strand
Strand 2
A
509 511anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 464first strand
Strand 2
A
472 476anti-parallel
Strand 3
A
492 495anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il