Analysis of interatomic Contacts of Structural Units in PDB entry:
4OF8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4OF8 entry

There are 4 chains in PDB entry 4OF8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 25	TYR 235
B	GLN 26	LYS 234
C	TYR 25	LYS 234
D	GLN 26	LYS 234

There are 9 helices in PDB entry 4OF8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	98	102	Right-handed 310
Helix 2	2	A	204	208	Right-handed 310
Helix 3	3	B	98	102	Right-handed 310
Helix 4	4	B	204	208	Right-handed 310
Helix 5	5	C	98	102	Right-handed 310
Helix 6	6	C	204	208	Right-handed 310
Helix 7	7	D	84	88	Right-handed 310
Helix 8	8	D	98	102	Right-handed 310
Helix 9	9	D	204	208	Right-handed 310

There are 24 sheets in PDB entry 4OF8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	50	52	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	124	129	parallel
Strand 3	A	103	109	anti-parallel
Strand 4	A	58	62	anti-parallel
Strand 5	A	65	66	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	124	129	parallel
Strand 3	A	103	109	anti-parallel
Strand 4	A	119	120	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	91	94	anti-parallel
Strand 3	A	79	82	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	A	151	160	anti-parallel
Strand 3	A	193	201	anti-parallel
Strand 4	A	180	186	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	146	first strand
Strand 2	A	225	234	parallel
Strand 3	A	210	217	anti-parallel
Strand 4	A	165	169	anti-parallel
Strand 5	A	175	176	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	50	52	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	124	129	parallel
Strand 3	B	103	109	anti-parallel
Strand 4	B	58	62	anti-parallel
Strand 5	B	65	66	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	124	129	parallel
Strand 3	B	103	109	anti-parallel
Strand 4	B	119	120	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	91	94	anti-parallel
Strand 3	B	79	82	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	137	first strand
Strand 2	B	151	160	anti-parallel
Strand 3	B	193	201	anti-parallel
Strand 4	B	180	186	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	146	first strand
Strand 2	B	225	234	parallel
Strand 3	B	210	217	anti-parallel
Strand 4	B	165	169	anti-parallel
Strand 5	B	175	176	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	50	52	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	124	129	parallel
Strand 3	C	103	109	anti-parallel
Strand 4	C	58	62	anti-parallel
Strand 5	C	65	66	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	124	129	parallel
Strand 3	C	103	109	anti-parallel
Strand 4	C	119	120	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	91	94	anti-parallel
Strand 3	C	79	82	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	151	160	anti-parallel
Strand 3	C	193	201	anti-parallel
Strand 4	C	180	186	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	146	first strand
Strand 2	C	225	234	parallel
Strand 3	C	210	217	anti-parallel
Strand 4	C	165	169	anti-parallel
Strand 5	C	175	176	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	50	52	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	124	129	parallel
Strand 3	D	103	109	anti-parallel
Strand 4	D	58	62	anti-parallel
Strand 5	D	65	66	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	124	129	parallel
Strand 3	D	103	109	anti-parallel
Strand 4	D	119	120	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	91	94	anti-parallel
Strand 3	D	79	82	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	137	first strand
Strand 2	D	151	160	anti-parallel
Strand 3	D	193	201	anti-parallel
Strand 4	D	180	186	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	144	first strand
Strand 2	D	225	232	parallel
Strand 3	D	210	217	anti-parallel
Strand 4	D	165	169	anti-parallel
Strand 5	D	175	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4OF8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4OF8