Analysis of interatomic Contacts of Structural Units in PDB entry:
4OFK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OFK entry

There are 2 chains in PDB entry 4OFK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 327ALA 429
B
 VAL 327PRO 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 4OFK. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
397 399Right-handed 310
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There are 4 sheets in PDB entry 4OFK. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 338first strand
Strand 2
A
347 354anti-parallel
Strand 3
A
386 395anti-parallel
Strand 4
A
378 381anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
417 428parallel
Strand 3
B
417 428anti-parallel
Strand 4
B
341 343parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 372first strand
Strand 2
A
362 367anti-parallel
Strand 3
A
405 414anti-parallel
Strand 4
A
417 428anti-parallel
Strand 5
B
417 428anti-parallel
Strand 6
B
405 414anti-parallel
Strand 7
B
362 367anti-parallel
Strand 8
B
370 371anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 337first strand
Strand 2
B
347 354anti-parallel
Strand 3
B
385 395anti-parallel
Strand 4
B
378 382anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il