Analysis of interatomic Contacts of Structural Units in PDB entry:
4OFP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4OFP entry

There are 4 chains in PDB entry 4OFP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 230	ALA 429
B	ASP 234	PRO 430
C	ASP 234	ALA 429
D	ASP 230	ALA 429

There are no helices in PDB entry 4OFP

There are 20 sheets in PDB entry 4OFP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	240	first strand
Strand 2	D	251	259	anti-parallel
Strand 3	D	288	296	anti-parallel
Strand 4	D	281	282	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	A	327	328	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	288	296	anti-parallel
Strand 3	A	251	259	anti-parallel
Strand 4	D	236	240	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	266	271	anti-parallel
Strand 3	A	306	311	anti-parallel
Strand 4	A	319	321	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	337	first strand
Strand 2	A	347	354	anti-parallel
Strand 3	A	385	395	anti-parallel
Strand 4	A	378	382	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	343	first strand
Strand 2	A	418	428	parallel
Strand 3	A	405	413	anti-parallel
Strand 4	A	364	367	anti-parallel
Strand 5	A	370	371	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	240	first strand
Strand 2	C	251	258	anti-parallel
Strand 3	C	289	296	anti-parallel
Strand 4	C	281	282	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	247	first strand
Strand 2	B	327	328	parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	289	296	anti-parallel
Strand 3	B	251	258	anti-parallel
Strand 4	C	235	240	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	275	first strand
Strand 2	B	266	271	anti-parallel
Strand 3	B	305	311	anti-parallel
Strand 4	B	319	324	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	337	first strand
Strand 2	B	347	354	anti-parallel
Strand 3	B	385	395	anti-parallel
Strand 4	B	378	382	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	343	first strand
Strand 2	B	418	428	parallel
Strand 3	B	405	413	anti-parallel
Strand 4	B	362	367	anti-parallel
Strand 5	B	370	371	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	247	first strand
Strand 2	C	327	328	parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	271	first strand
Strand 2	C	306	310	anti-parallel
Strand 3	C	320	321	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	337	first strand
Strand 2	C	347	354	anti-parallel
Strand 3	C	385	395	anti-parallel
Strand 4	C	378	382	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	343	first strand
Strand 2	C	418	428	parallel
Strand 3	C	405	413	anti-parallel
Strand 4	C	362	367	anti-parallel
Strand 5	C	370	372	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	247	first strand
Strand 2	D	327	328	parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	271	first strand
Strand 2	D	306	311	anti-parallel
Strand 3	D	320	321	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	337	first strand
Strand 2	D	347	354	anti-parallel
Strand 3	D	385	395	anti-parallel
Strand 4	D	378	382	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	343	first strand
Strand 2	D	418	428	parallel
Strand 3	D	405	413	anti-parallel
Strand 4	D	362	367	anti-parallel
Strand 5	D	370	372	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4OFP

Analysis of interatomic Contacts of Structural Units in PDB entry:
4OFP