Analysis of interatomic Contacts of Structural Units in PDB entry:
4OGC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OGC entry

There is 1 chain in PDB entry 4OGC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8GLU 1101
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4OGC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
277 290Right-handed alpha
Helix 2
2
A
305 319Right-handed alpha
Helix 3
3
A
325 334Right-handed alpha
Helix 4
4
A
336 338Right-handed 310
Helix 5
5
A
360 369Right-handed alpha
Helix 6
6
A
371 380Right-handed alpha
Helix 7
7
A
382 395Right-handed alpha
Helix 8
8
A
400 409Right-handed alpha
Helix 9
9
A
410 417Right-handed alpha
Helix 10
10
A
418 420Right-handed 310
Helix 11
11
A
430 444Right-handed alpha
Helix 12
12
A
447 457Right-handed alpha
Helix 13
13
A
475 497Right-handed alpha
Helix 14
14
A
514 543Right-handed alpha
Helix 15
15
A
549 562Right-handed alpha
Helix 16
16
A
594 596Right-handed 310
Helix 17
17
A
602 610Right-handed alpha
Helix 18
18
A
613 621Right-handed alpha
Helix 19
19
A
627 637Right-handed alpha
Helix 20
20
A
646 662Right-handed alpha
Helix 21
21
A
679 693Right-handed alpha
Helix 22
22
A
704 714Right-handed alpha
Helix 23
23
A
734 746Right-handed alpha
Helix 24
24
A
747 768Right-handed alpha
Helix 25
25
A
772 776Right-handed 310
Helix 26
26
A
780 807Right-handed alpha
Helix 27
27
A
839 841Right-handed 310
Helix 28
28
A
843 849Right-handed alpha
Helix 29
29
A
852 862Right-handed alpha
Helix 30
30
A
949 955Right-handed 310
Helix 31
31
A
968 973Right-handed alpha
Helix 32
32
A
975 984Right-handed alpha
Helix 33
33
A
1008 1018Right-handed alpha
Helix 34
34
A
1043 1047Right-handed 310
Helix 35
35
A
1051 1059Right-handed alpha
Helix 36
36
A
1067 1073Right-handed alpha
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There are 8 sheets in PDB entry 4OGC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
697 701first strand
Strand 2
A
501 505parallel
Strand 3
A
11 18parallel
Strand 4
A
22 30anti-parallel
Strand 5
A
36 46anti-parallel
Strand 6
A
811 813parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
293 294anti-parallel
Strand 3
A
340 341anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 582first strand
Strand 2
A
598 601anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
834 837first strand
Strand 2
A
891 894anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
878 881first strand
Strand 2
A
884 887anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
912 915first strand
Strand 2
A
918 921anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
940 947first strand
Strand 2
A
926 934anti-parallel
Strand 3
A
987 993anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1066first strand
Strand 2
A
1034 1039anti-parallel
Strand 3
A
1023 1028anti-parallel
Strand 4
A
998 1000anti-parallel
Strand 5
A
1076 1078anti-parallel
Strand 6
A
1098 1099anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il