Analysis of interatomic Contacts of Structural Units in PDB entry:
4OGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OGD entry

There are 2 chains in PDB entry 4OGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ASN 456
B
 ALA 2ASN 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4OGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 42Right-handed alpha
Helix 2
2
A
44 62Right-handed alpha
Helix 3
3
A
62 75Right-handed alpha
Helix 4
4
A
77 104Right-handed alpha
Helix 5
5
A
135 149Right-handed alpha
Helix 6
6
A
160 174Right-handed alpha
Helix 7
7
A
187 197Right-handed alpha
Helix 8
8
A
208 222Right-handed alpha
Helix 9
9
A
243 257Right-handed alpha
Helix 10
10
A
258 261Right-handed 310
Helix 11
11
A
275 289Right-handed alpha
Helix 12
12
A
307 324Right-handed alpha
Helix 13
13
A
354 359Right-handed 310
Helix 14
14
A
373 383Right-handed alpha
Helix 15
15
A
396 407Right-handed alpha
Helix 16
16
A
440 444Right-handed 310
Helix 17
17
B
21 42Right-handed alpha
Helix 18
18
B
44 62Right-handed alpha
Helix 19
19
B
62 75Right-handed alpha
Helix 20
20
B
77 104Right-handed alpha
Helix 21
21
B
135 149Right-handed alpha
Helix 22
22
B
160 174Right-handed alpha
Helix 23
23
B
187 197Right-handed alpha
Helix 24
24
B
208 222Right-handed alpha
Helix 25
25
B
243 257Right-handed alpha
Helix 26
26
B
258 261Right-handed 310
Helix 27
27
B
275 289Right-handed alpha
Helix 28
28
B
307 324Right-handed alpha
Helix 29
29
B
354 359Right-handed 310
Helix 30
30
B
373 383Right-handed alpha
Helix 31
31
B
396 407Right-handed alpha
Helix 32
32
B
440 444Right-handed 310
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There are 8 sheets in PDB entry 4OGD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
13 16anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
113 120anti-parallel
Strand 3
A
448 455anti-parallel
Strand 4
B
411 414parallel
Strand 5
B
391 393parallel
Strand 6
B
235 238parallel
Strand 7
B
268 272parallel
Strand 8
B
365 371parallel
Strand 9
B
345 348parallel
Strand 10
B
327 330anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
152 155parallel
Strand 3
A
124 128parallel
Strand 4
A
200 206parallel
Strand 5
A
225 229parallel
Strand 6
A
433 434anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 330first strand
Strand 2
A
345 348anti-parallel
Strand 3
A
365 371parallel
Strand 4
A
268 272parallel
Strand 5
A
235 238parallel
Strand 6
A
391 393parallel
Strand 7
A
411 414parallel
Strand 8
B
448 455parallel
Strand 9
B
113 120anti-parallel
Strand 10
B
106 108anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
429 430anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
12 16anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 183first strand
Strand 2
B
152 155parallel
Strand 3
B
124 128parallel
Strand 4
B
200 206parallel
Strand 5
B
225 229parallel
Strand 6
B
433 434anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 387first strand
Strand 2
B
429 430anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il