Analysis of interatomic Contacts of Structural Units in PDB entry:
4OGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OGE entry

There is 1 chain in PDB entry 4OGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
HIS 10GLU 1101
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 4OGE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
66 92Right-handed alpha
Helix 2
2
A
138 148Right-handed alpha
Helix 3
3
A
236 243Right-handed alpha
Helix 4
4
A
244 247Right-handed 310
Helix 5
5
A
277 291Right-handed alpha
Helix 6
6
A
305 319Right-handed alpha
Helix 7
7
A
325 334Right-handed alpha
Helix 8
8
A
336 338Right-handed 310
Helix 9
9
A
360 369Right-handed alpha
Helix 10
10
A
371 380Right-handed alpha
Helix 11
11
A
383 395Right-handed alpha
Helix 12
12
A
400 405Right-handed alpha
Helix 13
13
A
414 419Right-handed alpha
Helix 14
14
A
430 444Right-handed alpha
Helix 15
15
A
447 457Right-handed alpha
Helix 16
16
A
475 497Right-handed alpha
Helix 17
17
A
513 543Right-handed alpha
Helix 18
18
A
549 562Right-handed alpha
Helix 19
19
A
594 596Right-handed 310
Helix 20
20
A
602 610Right-handed alpha
Helix 21
21
A
613 622Right-handed alpha
Helix 22
22
A
627 637Right-handed alpha
Helix 23
23
A
647 663Right-handed alpha
Helix 24
24
A
679 693Right-handed alpha
Helix 25
25
A
704 714Right-handed alpha
Helix 26
26
A
734 746Right-handed alpha
Helix 27
27
A
747 767Right-handed alpha
Helix 28
28
A
772 776Right-handed 310
Helix 29
29
A
780 807Right-handed alpha
Helix 30
30
A
839 841Right-handed 310
Helix 31
31
A
843 849Right-handed alpha
Helix 32
32
A
852 861Right-handed alpha
Helix 33
33
A
949 955Right-handed 310
Helix 34
34
A
968 973Right-handed alpha
Helix 35
35
A
975 984Right-handed alpha
Helix 36
36
A
1008 1018Right-handed alpha
Helix 37
37
A
1043 1047Right-handed 310
Helix 38
38
A
1051 1059Right-handed alpha
Helix 39
39
A
1067 1073Right-handed alpha
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There are 8 sheets in PDB entry 4OGE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
697 701first strand
Strand 2
A
501 505parallel
Strand 3
A
11 18parallel
Strand 4
A
22 30anti-parallel
Strand 5
A
36 46anti-parallel
Strand 6
A
811 813parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
301 303first strand
Strand 2
A
293 295anti-parallel
Strand 3
A
340 341anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
579 582first strand
Strand 2
A
598 601anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
834 837first strand
Strand 2
A
891 894anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
878 881first strand
Strand 2
A
884 887anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
912 915first strand
Strand 2
A
918 921anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
940 947first strand
Strand 2
A
926 934anti-parallel
Strand 3
A
987 993anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1063 1066first strand
Strand 2
A
1034 1039anti-parallel
Strand 3
A
1023 1031anti-parallel
Strand 4
A
998 1000anti-parallel
Strand 5
A
1076 1078anti-parallel
Strand 6
A
1098 1099anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il