Analysis of interatomic Contacts of Structural Units in PDB entry:
4OGY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4OGY entry

There are 6 chains in PDB entry 4OGY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 391	ASP 629
B	ILE 391	ASP 629
H	GLU 1	LYS 223
L	ASP 1	GLU 212
M	VAL 2	PRO 222
N	ASP 1	LYS 206

There are 25 helices in PDB entry 4OGY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	432	437	Right-handed 310
Helix 2	2	A	441	443	Right-handed 310
Helix 3	3	A	453	457	Right-handed 310
Helix 4	4	A	506	510	Right-handed 310
Helix 5	5	A	544	551	Right-handed alpha
Helix 6	6	A	617	629	Right-handed alpha
Helix 7	7	B	432	437	Right-handed 310
Helix 8	8	B	441	443	Right-handed 310
Helix 9	9	B	453	457	Right-handed 310
Helix 10	10	B	506	512	Right-handed 310
Helix 11	11	B	544	551	Right-handed alpha
Helix 12	12	B	617	629	Right-handed alpha
Helix 13	13	H	87	91	Right-handed 310
Helix 14	14	H	165	167	Right-handed 310
Helix 15	15	H	196	198	Right-handed 310
Helix 16	16	H	210	213	Right-handed 310
Helix 17	17	L	79	83	Right-handed 310
Helix 18	18	L	120	126	Right-handed alpha
Helix 19	19	L	182	187	Right-handed alpha
Helix 20	20	M	87	91	Right-handed 310
Helix 21	21	M	165	167	Right-handed 310
Helix 22	22	M	210	213	Right-handed 310
Helix 23	23	N	79	83	Right-handed 310
Helix 24	24	N	120	126	Right-handed alpha
Helix 25	25	N	182	187	Right-handed alpha

There are 26 sheets in PDB entry 4OGY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	396	first strand
Strand 2	A	536	539	anti-parallel
Strand 3	A	517	521	anti-parallel
Strand 4	A	581	586	anti-parallel
Strand 5	A	589	598	anti-parallel
Strand 6	A	609	613	anti-parallel
Strand 7	A	561	564	anti-parallel
Strand 8	A	542	543	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	448	first strand
Strand 2	A	405	411	anti-parallel
Strand 3	A	415	425	anti-parallel
Strand 4	A	428	431	anti-parallel
Strand 5	A	485	489	anti-parallel
Strand 6	A	466	471	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	396	first strand
Strand 2	B	536	539	anti-parallel
Strand 3	B	517	521	anti-parallel
Strand 4	B	581	586	anti-parallel
Strand 5	B	589	598	anti-parallel
Strand 6	B	609	613	anti-parallel
Strand 7	B	561	564	anti-parallel
Strand 8	B	542	543	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	449	first strand
Strand 2	B	405	411	anti-parallel
Strand 3	B	415	425	anti-parallel
Strand 4	B	428	431	anti-parallel
Strand 5	B	485	489	anti-parallel
Strand 6	B	466	471	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	110	112	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	144	154	anti-parallel
Strand 3	H	185	194	anti-parallel
Strand 4	H	172	174	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	144	154	anti-parallel
Strand 3	H	185	194	anti-parallel
Strand 4	H	178	179	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	160	163	first strand
Strand 2	H	204	209	anti-parallel
Strand 3	H	214	219	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	101	105	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	101	105	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	96	97	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	113	117	first strand
Strand 2	L	128	138	anti-parallel
Strand 3	L	172	181	anti-parallel
Strand 4	L	158	162	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	152	153	first strand
Strand 2	L	144	149	anti-parallel
Strand 3	L	190	196	anti-parallel
Strand 4	L	204	209	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	7	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	78	83	anti-parallel
Strand 4	M	68	73	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	116	120	parallel
Strand 3	M	92	100	anti-parallel
Strand 4	M	32	39	anti-parallel
Strand 5	M	45	51	anti-parallel
Strand 6	M	58	60	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	116	120	parallel
Strand 3	M	92	100	anti-parallel
Strand 4	M	110	112	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	129	133	first strand
Strand 2	M	145	154	anti-parallel
Strand 3	M	185	193	anti-parallel
Strand 4	M	172	174	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	129	133	first strand
Strand 2	M	145	154	anti-parallel
Strand 3	M	185	193	anti-parallel
Strand 4	M	178	179	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	160	163	first strand
Strand 2	M	204	209	anti-parallel
Strand 3	M	214	219	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	70	75	anti-parallel
Strand 4	N	62	67	anti-parallel

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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	101	105	parallel
Strand 3	N	84	90	anti-parallel
Strand 4	N	33	38	anti-parallel
Strand 5	N	45	49	anti-parallel
Strand 6	N	53	54	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	101	105	parallel
Strand 3	N	84	90	anti-parallel
Strand 4	N	96	97	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	113	117	first strand
Strand 2	N	128	138	anti-parallel
Strand 3	N	172	181	anti-parallel
Strand 4	N	158	162	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	152	153	first strand
Strand 2	N	144	149	anti-parallel
Strand 3	N	190	196	anti-parallel
Strand 4	N	204	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4OGY

Analysis of interatomic Contacts of Structural Units in PDB entry:
4OGY