Analysis of interatomic Contacts of Structural Units in PDB entry:
4OGZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OGZ entry

There are 2 chains in PDB entry 4OGZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 30LYS 496
B
 SER 25LYS 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 4OGZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
129 134Right-handed alpha
Helix 2
2
A
138 152Right-handed alpha
Helix 3
3
A
154 158Right-handed 310
Helix 4
4
A
188 200Right-handed alpha
Helix 5
5
A
224 235Right-handed alpha
Helix 6
6
A
250 268Right-handed alpha
Helix 7
7
A
283 288Right-handed alpha
Helix 8
8
A
289 292Right-handed 310
Helix 9
9
A
318 327Right-handed alpha
Helix 10
10
A
328 333Right-handed 310
Helix 11
11
A
363 377Right-handed alpha
Helix 12
12
A
391 399Right-handed alpha
Helix 13
13
A
400 408Right-handed alpha
Helix 14
14
B
26 30Right-handed alpha
Helix 15
15
B
31 33Right-handed 310
Helix 16
16
B
129 134Right-handed alpha
Helix 17
17
B
138 153Right-handed alpha
Helix 18
18
B
154 158Right-handed 310
Helix 19
19
B
189 200Right-handed alpha
Helix 20
20
B
224 235Right-handed alpha
Helix 21
21
B
250 268Right-handed alpha
Helix 22
22
B
283 288Right-handed alpha
Helix 23
23
B
289 292Right-handed 310
Helix 24
24
B
318 327Right-handed alpha
Helix 25
25
B
328 333Right-handed 310
Helix 26
26
B
363 377Right-handed alpha
Helix 27
27
B
391 399Right-handed alpha
Helix 28
28
B
400 408Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 4OGZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
58 59anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
105 115parallel
Strand 3
A
92 102anti-parallel
Strand 4
A
65 69anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
83 87anti-parallel
Strand 3
A
75 77anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 340first strand
Strand 2
A
295 297parallel
Strand 3
A
273 277parallel
Strand 4
A
239 243parallel
Strand 5
A
203 209parallel
Strand 6
A
161 163parallel
Strand 7
A
125 128parallel
Strand 8
A
381 383parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 420first strand
Strand 2
A
424 430anti-parallel
Strand 3
A
436 442anti-parallel
Strand 4
A
490 496anti-parallel
Strand 5
A
464 467anti-parallel
Strand 6
A
472 473anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 452first strand
Strand 2
A
481 485anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
58 59anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
105 115parallel
Strand 3
B
92 102anti-parallel
Strand 4
B
65 69anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 55first strand
Strand 2
B
83 87anti-parallel
Strand 3
B
75 77anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 340first strand
Strand 2
B
295 297parallel
Strand 3
B
273 277parallel
Strand 4
B
239 243parallel
Strand 5
B
203 209parallel
Strand 6
B
161 163parallel
Strand 7
B
125 128parallel
Strand 8
B
381 383parallel
Back to list of sheets
Back to top of page

There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
416 420first strand
Strand 2
B
424 430anti-parallel
Strand 3
B
436 442anti-parallel
Strand 4
B
490 496anti-parallel
Strand 5
B
464 467anti-parallel
Strand 6
B
472 473anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
448 452first strand
Strand 2
B
481 485anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il