Analysis of interatomic Contacts of Structural Units in PDB entry:
4OI0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OI0 entry

There are 2 chains in PDB entry 4OI0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4ASP 423
B
 G 1 C 2
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 4OI0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
83 105Right-handed alpha
Helix 2
2
A
126 141Right-handed alpha
Helix 3
3
A
192 195Right-handed 310
Helix 4
4
A
196 215Right-handed alpha
Helix 5
5
A
218 225Right-handed alpha
Helix 6
6
A
236 249Right-handed alpha
Helix 7
7
A
259 270Right-handed alpha
Helix 8
8
A
289 307Right-handed alpha
Helix 9
9
A
323 325Right-handed 310
Helix 10
10
A
359 363Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 4OI0. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
65 70anti-parallel
Strand 3
A
27 34anti-parallel
Strand 4
A
48 51anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
37 38anti-parallel
Strand 3
A
56 61anti-parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
73 79anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
162 167anti-parallel
Strand 3
A
146 149anti-parallel
Strand 4
A
226 229parallel
Strand 5
A
116 120parallel
Strand 6
A
253 257parallel
Strand 7
A
275 279parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 321first strand
Strand 2
A
399 404anti-parallel
Strand 3
A
384 394anti-parallel
Strand 4
A
365 370anti-parallel
Strand 5
A
413 420anti-parallel
Strand 6
A
326 330parallel
Strand 7
A
353 355anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il