Analysis of interatomic Contacts of Structural Units in PDB entry:
4OIF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OIF entry

There are 3 chains in PDB entry 4OIF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3ARG 687
B
 LYS 4ARG 687
C
 LYS 4ARG 687
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 76 helices in PDB entry 4OIF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 27Right-handed 310
Helix 2
2
A
30 44Right-handed alpha
Helix 3
3
A
55 60Right-handed alpha
Helix 4
4
A
68 81Right-handed alpha
Helix 5
5
A
90 93Right-handed 310
Helix 6
6
A
95 102Right-handed alpha
Helix 7
7
A
103 106Right-handed 310
Helix 8
8
A
127 146Right-handed alpha
Helix 9
9
A
166 181Right-handed alpha
Helix 10
10
A
184 193Right-handed alpha
Helix 11
11
A
195 199Right-handed 310
Helix 12
12
A
203 207Right-handed 310
Helix 13
13
A
218 248Right-handed alpha
Helix 14
14
A
271 276Right-handed alpha
Helix 15
15
A
277 279Right-handed 310
Helix 16
16
A
296 314Right-handed alpha
Helix 17
17
A
341 353Right-handed alpha
Helix 18
18
A
386 401Right-handed alpha
Helix 19
19
A
419 429Right-handed alpha
Helix 20
20
A
433 437Right-handed 310
Helix 21
21
A
438 453Right-handed alpha
Helix 22
22
A
465 469Right-handed 310
Helix 23
23
A
481 494Right-handed alpha
Helix 24
24
A
519 527Right-handed alpha
Helix 25
25
A
600 615Right-handed alpha
Helix 26
26
B
23 27Right-handed 310
Helix 27
27
B
30 44Right-handed alpha
Helix 28
28
B
55 60Right-handed alpha
Helix 29
29
B
68 81Right-handed alpha
Helix 30
30
B
95 102Right-handed alpha
Helix 31
31
B
103 106Right-handed 310
Helix 32
32
B
127 146Right-handed alpha
Helix 33
33
B
166 181Right-handed alpha
Helix 34
34
B
184 193Right-handed alpha
Helix 35
35
B
195 199Right-handed 310
Helix 36
36
B
203 207Right-handed 310
Helix 37
37
B
218 248Right-handed alpha
Helix 38
38
B
271 276Right-handed alpha
Helix 39
39
B
277 279Right-handed 310
Helix 40
40
B
296 314Right-handed alpha
Helix 41
41
B
341 353Right-handed alpha
Helix 42
42
B
386 401Right-handed alpha
Helix 43
43
B
402 406Right-handed 310
Helix 44
44
B
419 429Right-handed alpha
Helix 45
45
B
433 437Right-handed 310
Helix 46
46
B
438 453Right-handed alpha
Helix 47
47
B
465 469Right-handed 310
Helix 48
48
B
481 494Right-handed alpha
Helix 49
49
B
519 527Right-handed alpha
Helix 50
50
B
600 616Right-handed alpha
Helix 51
51
C
23 27Right-handed 310
Helix 52
52
C
30 44Right-handed alpha
Helix 53
53
C
55 60Right-handed alpha
Helix 54
54
C
68 81Right-handed alpha
Helix 55
55
C
90 93Right-handed 310
Helix 56
56
C
95 102Right-handed alpha
Helix 57
57
C
103 106Right-handed 310
Helix 58
58
C
127 146Right-handed alpha
Helix 59
59
C
166 181Right-handed alpha
Helix 60
60
C
184 193Right-handed alpha
Helix 61
61
C
195 199Right-handed 310
Helix 62
62
C
203 207Right-handed 310
Helix 63
63
C
218 248Right-handed alpha
Helix 64
64
C
271 276Right-handed alpha
Helix 65
65
C
277 279Right-handed 310
Helix 66
66
C
296 315Right-handed alpha
Helix 67
67
C
341 353Right-handed alpha
Helix 68
68
C
386 401Right-handed alpha
Helix 69
69
C
402 406Right-handed 310
Helix 70
70
C
419 429Right-handed alpha
Helix 71
71
C
433 437Right-handed 310
Helix 72
72
C
438 453Right-handed alpha
Helix 73
73
C
465 469Right-handed 310
Helix 74
74
C
481 494Right-handed alpha
Helix 75
75
C
519 527Right-handed alpha
Helix 76
76
C
600 616Right-handed alpha
Back to top of page

There are 19 sheets in PDB entry 4OIF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
151 155parallel
Strand 3
A
84 88parallel
Strand 4
A
48 51parallel
Strand 5
A
17 22parallel
Strand 6
A
357 360parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
A
283 285parallel
Strand 3
A
320 323parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
265 266anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 460first strand
Strand 2
A
414 417parallel
Strand 3
A
471 474parallel
Strand 4
A
497 501parallel
Strand 5
A
590 595parallel
Strand 6
A
580 587anti-parallel
Strand 7
A
566 571anti-parallel
Strand 8
A
542 546anti-parallel
Strand 9
A
549 554anti-parallel
Strand 10
A
598 599anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 535first strand
Strand 2
A
556 562anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 624first strand
Strand 2
A
652 662anti-parallel
Strand 3
A
680 686anti-parallel
Strand 4
A
639 646anti-parallel
Strand 5
A
629 635anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 624first strand
Strand 2
A
652 662anti-parallel
Strand 3
A
668 675anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 254first strand
Strand 2
B
151 155parallel
Strand 3
B
84 88parallel
Strand 4
B
48 51parallel
Strand 5
B
17 22parallel
Strand 6
B
355 360parallel
Strand 7
B
319 323parallel
Strand 8
B
283 285parallel
Strand 9
B
256 257parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 260first strand
Strand 2
B
265 266anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 460first strand
Strand 2
B
414 417parallel
Strand 3
B
471 474parallel
Strand 4
B
497 501parallel
Strand 5
B
590 595parallel
Strand 6
B
580 587anti-parallel
Strand 7
B
566 571anti-parallel
Strand 8
B
542 546anti-parallel
Strand 9
B
549 554anti-parallel
Strand 10
B
598 599anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
528 535first strand
Strand 2
B
556 562anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
623 624first strand
Strand 2
B
652 662anti-parallel
Strand 3
B
680 686anti-parallel
Strand 4
B
639 646anti-parallel
Strand 5
B
629 635anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
623 624first strand
Strand 2
B
652 662anti-parallel
Strand 3
B
668 675anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
253 254first strand
Strand 2
C
151 155parallel
Strand 3
C
84 88parallel
Strand 4
C
48 51parallel
Strand 5
C
17 22parallel
Strand 6
C
355 360parallel
Strand 7
C
319 324parallel
Strand 8
C
283 286parallel
Strand 9
C
256 257parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
259 260first strand
Strand 2
C
265 266anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
457 460first strand
Strand 2
C
414 417parallel
Strand 3
C
471 474parallel
Strand 4
C
497 501parallel
Strand 5
C
590 595parallel
Strand 6
C
580 587anti-parallel
Strand 7
C
566 571anti-parallel
Strand 8
C
542 546anti-parallel
Strand 9
C
549 554anti-parallel
Strand 10
C
598 599anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
528 535first strand
Strand 2
C
556 562anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
623 624first strand
Strand 2
C
652 662anti-parallel
Strand 3
C
680 686anti-parallel
Strand 4
C
639 646anti-parallel
Strand 5
C
629 635anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
623 624first strand
Strand 2
C
652 662anti-parallel
Strand 3
C
668 675anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il