Analysis of interatomic Contacts of Structural Units in PDB entry:
4OIG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OIG entry

There are 4 chains in PDB entry 4OIG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 178ALA 352
B
 VAL 178ALA 352
D
 VAL 178ALA 352
E
 VAL 178ALA 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4OIG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
226 230Right-handed 310
Helix 2
2
A
237 241Right-handed 310
Helix 3
3
A
244 248Right-handed 310
Helix 4
4
A
252 256Right-handed 310
Helix 5
5
A
267 271Right-handed 310
Helix 6
6
B
180 184Right-handed 310
Helix 7
7
B
226 230Right-handed 310
Helix 8
8
B
237 241Right-handed 310
Helix 9
9
B
244 248Right-handed 310
Helix 10
10
B
252 256Right-handed 310
Helix 11
11
B
267 271Right-handed 310
Helix 12
12
D
180 184Right-handed 310
Helix 13
13
D
226 230Right-handed 310
Helix 14
14
D
237 241Right-handed 310
Helix 15
15
D
244 248Right-handed 310
Helix 16
16
D
252 256Right-handed 310
Helix 17
17
D
267 271Right-handed 310
Helix 18
18
E
180 184Right-handed 310
Helix 19
19
E
226 230Right-handed 310
Helix 20
20
E
237 241Right-handed 310
Helix 21
21
E
244 248Right-handed 310
Helix 22
22
E
252 256Right-handed 310
Helix 23
23
E
267 271Right-handed 310
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There are 6 sheets in PDB entry 4OIG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 15 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 299first strand
Strand 2
A
329 331anti-parallel
Strand 3
A
321 324anti-parallel
Strand 4
A
273 277anti-parallel
Strand 5
A
210 217anti-parallel
Strand 6
A
200 206anti-parallel
Strand 7
A
192 196anti-parallel
Strand 8
A
185 189anti-parallel
Strand 9
B
185 189anti-parallel
Strand 10
B
192 196anti-parallel
Strand 11
B
200 206anti-parallel
Strand 12
B
210 217anti-parallel
Strand 13
B
273 277anti-parallel
Strand 14
B
321 324anti-parallel
Strand 15
B
329 331anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
310 313parallel
Strand 3
A
336 337anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 287first strand
Strand 2
B
310 313parallel
Strand 3
B
335 337anti-parallel
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There are 16 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
298 299first strand
Strand 2
D
329 331anti-parallel
Strand 3
D
321 324anti-parallel
Strand 4
D
273 277anti-parallel
Strand 5
D
210 217anti-parallel
Strand 6
D
200 206anti-parallel
Strand 7
D
192 196anti-parallel
Strand 8
D
185 189anti-parallel
Strand 9
E
185 189anti-parallel
Strand 10
E
192 196anti-parallel
Strand 11
E
200 206anti-parallel
Strand 12
E
210 217anti-parallel
Strand 13
E
273 277anti-parallel
Strand 14
E
321 324anti-parallel
Strand 15
E
329 331anti-parallel
Strand 16
E
298 299anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
284 287first strand
Strand 2
D
310 313parallel
Strand 3
D
335 337anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
284 287first strand
Strand 2
E
310 313parallel
Strand 3
E
335 337anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il