Analysis of interatomic Contacts of Structural Units in PDB entry:
4OJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4OJ5 entry

There is 1 chain in PDB entry 4OJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 12	PHE 683

There are 48 helices in PDB entry 4OJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	27	Right-handed alpha
Helix 2	2	A	29	31	Right-handed 310
Helix 3	3	A	87	94	Right-handed alpha
Helix 4	4	A	140	144	Right-handed 310
Helix 5	5	A	155	166	Right-handed alpha
Helix 6	6	A	178	182	Right-handed 310
Helix 7	7	A	187	192	Right-handed 310
Helix 8	8	A	201	213	Right-handed alpha
Helix 9	9	A	221	228	Right-handed alpha
Helix 10	10	A	308	315	Right-handed alpha
Helix 11	11	A	363	367	Right-handed 310
Helix 12	12	A	419	423	Right-handed 310
Helix 13	13	A	484	488	Right-handed 310
Helix 14	14	A	563	568	Right-handed alpha
Helix 15	15	A	612	621	Right-handed alpha
Helix 16	16	A	749	753	Right-handed 310
Helix 17	17	B	15	27	Right-handed alpha
Helix 18	18	B	29	31	Right-handed 310
Helix 19	19	B	87	94	Right-handed alpha
Helix 20	20	B	140	144	Right-handed 310
Helix 21	21	B	155	166	Right-handed alpha
Helix 22	22	B	178	182	Right-handed 310
Helix 23	23	B	187	192	Right-handed 310
Helix 24	24	B	201	213	Right-handed alpha
Helix 25	25	B	221	228	Right-handed alpha
Helix 26	26	B	308	315	Right-handed alpha
Helix 27	27	B	363	367	Right-handed 310
Helix 28	28	B	419	423	Right-handed 310
Helix 29	29	B	484	488	Right-handed 310
Helix 30	30	B	563	568	Right-handed alpha
Helix 31	31	B	612	621	Right-handed alpha
Helix 32	32	B	749	753	Right-handed 310
Helix 33	33	C	13	27	Right-handed alpha
Helix 34	34	C	29	31	Right-handed 310
Helix 35	35	C	87	94	Right-handed alpha
Helix 36	36	C	155	166	Right-handed alpha
Helix 37	37	C	178	182	Right-handed 310
Helix 38	38	C	187	192	Right-handed 310
Helix 39	39	C	201	211	Right-handed alpha
Helix 40	40	C	221	228	Right-handed alpha
Helix 41	41	C	229	231	Right-handed 310
Helix 42	42	C	308	314	Right-handed alpha
Helix 43	43	C	363	367	Right-handed 310
Helix 44	44	C	419	423	Right-handed 310
Helix 45	45	C	484	488	Right-handed 310
Helix 46	46	C	563	568	Right-handed alpha
Helix 47	47	C	612	621	Right-handed alpha
Helix 48	48	C	749	753	Right-handed 310

There are 33 sheets in PDB entry 4OJ5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	47	50	parallel
Strand 3	A	55	58	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	72	first strand
Strand 2	A	77	80	anti-parallel
Strand 3	A	83	86	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	115	119	parallel
Strand 3	A	122	126	anti-parallel
Strand 4	A	151	154	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	132	134	anti-parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	200	first strand
Strand 2	A	241	244	parallel
Strand 3	A	271	274	parallel
Strand 4	A	330	333	parallel
Strand 5	A	355	356	parallel
Strand 6	A	388	391	parallel
Strand 7	A	411	414	parallel
Strand 8	A	454	456	parallel
Strand 9	A	481	483	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	219	first strand
Strand 2	A	297	299	anti-parallel
Strand 3	A	288	291	anti-parallel
Strand 4	A	317	319	anti-parallel

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There are 12 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	237	first strand
Strand 2	A	254	257	parallel
Strand 3	A	324	327	parallel
Strand 4	A	350	352	parallel
Strand 5	A	383	385	parallel
Strand 6	A	406	408	parallel
Strand 7	A	449	451	parallel
Strand 8	A	475	478	parallel
Strand 9	A	500	505	parallel
Strand 10	A	531	536	parallel
Strand 11	A	554	557	parallel
Strand 12	A	576	580	parallel

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There are 11 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	250	first strand
Strand 2	A	282	286	parallel
Strand 3	A	339	344	parallel
Strand 4	A	372	377	parallel
Strand 5	A	394	399	parallel
Strand 6	A	438	443	parallel
Strand 7	A	460	465	parallel
Strand 8	A	491	496	parallel
Strand 9	A	518	523	parallel
Strand 10	A	543	548	parallel
Strand 11	A	569	571	parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	589	first strand
Strand 2	A	624	627	parallel
Strand 3	A	644	646	parallel
Strand 4	A	665	670	parallel
Strand 5	A	690	696	parallel
Strand 6	A	714	720	parallel
Strand 7	A	737	744	parallel
Strand 8	A	761	768	parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	634	first strand
Strand 2	A	650	653	parallel
Strand 3	A	675	677	parallel
Strand 4	A	699	700	parallel
Strand 5	A	724	725	parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	638	639	first strand
Strand 2	A	659	661	parallel
Strand 3	A	683	685	parallel
Strand 4	A	707	709	parallel
Strand 5	A	730	732	parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	B	47	50	parallel
Strand 3	B	55	58	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	72	first strand
Strand 2	B	77	80	anti-parallel
Strand 3	B	84	86	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	115	119	parallel
Strand 3	B	122	126	anti-parallel
Strand 4	B	151	154	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	110	first strand
Strand 2	B	132	134	anti-parallel

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There are 9 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	200	first strand
Strand 2	B	241	244	parallel
Strand 3	B	271	274	parallel
Strand 4	B	330	333	parallel
Strand 5	B	355	356	parallel
Strand 6	B	388	391	parallel
Strand 7	B	411	414	parallel
Strand 8	B	454	456	parallel
Strand 9	B	481	483	parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	219	first strand
Strand 2	B	297	299	anti-parallel
Strand 3	B	288	291	anti-parallel
Strand 4	B	317	319	anti-parallel

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There are 12 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	237	first strand
Strand 2	B	254	257	parallel
Strand 3	B	324	327	parallel
Strand 4	B	350	352	parallel
Strand 5	B	383	385	parallel
Strand 6	B	406	408	parallel
Strand 7	B	449	451	parallel
Strand 8	B	475	478	parallel
Strand 9	B	500	505	parallel
Strand 10	B	531	536	parallel
Strand 11	B	554	557	parallel
Strand 12	B	576	580	parallel

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There are 11 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	250	first strand
Strand 2	B	282	286	parallel
Strand 3	B	339	344	parallel
Strand 4	B	372	377	parallel
Strand 5	B	394	399	parallel
Strand 6	B	438	443	parallel
Strand 7	B	460	465	parallel
Strand 8	B	491	496	parallel
Strand 9	B	518	523	parallel
Strand 10	B	543	548	parallel
Strand 11	B	569	571	parallel

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There are 8 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	589	first strand
Strand 2	B	624	627	parallel
Strand 3	B	644	646	parallel
Strand 4	B	665	670	parallel
Strand 5	B	690	696	parallel
Strand 6	B	714	720	parallel
Strand 7	B	737	744	parallel
Strand 8	B	761	768	parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	631	634	first strand
Strand 2	B	650	653	parallel
Strand 3	B	674	677	parallel
Strand 4	B	699	700	parallel
Strand 5	B	724	725	parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	639	first strand
Strand 2	B	659	661	parallel
Strand 3	B	683	685	parallel
Strand 4	B	705	709	parallel
Strand 5	B	728	732	parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	35	first strand
Strand 2	C	47	50	parallel
Strand 3	C	55	58	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	72	first strand
Strand 2	C	77	80	anti-parallel
Strand 3	C	83	86	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	115	119	parallel
Strand 3	C	122	126	anti-parallel
Strand 4	C	151	154	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	110	first strand
Strand 2	C	132	134	anti-parallel

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There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	200	first strand
Strand 2	C	241	244	parallel
Strand 3	C	271	274	parallel
Strand 4	C	330	333	parallel
Strand 5	C	355	356	parallel
Strand 6	C	388	391	parallel
Strand 7	C	411	414	parallel
Strand 8	C	454	456	parallel
Strand 9	C	481	483	parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	219	first strand
Strand 2	C	297	299	anti-parallel
Strand 3	C	288	291	anti-parallel
Strand 4	C	317	319	anti-parallel

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There are 12 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	237	first strand
Strand 2	C	254	257	parallel
Strand 3	C	324	327	parallel
Strand 4	C	350	352	parallel
Strand 5	C	383	385	parallel
Strand 6	C	406	408	parallel
Strand 7	C	449	451	parallel
Strand 8	C	475	478	parallel
Strand 9	C	500	505	parallel
Strand 10	C	531	536	parallel
Strand 11	C	554	557	parallel
Strand 12	C	576	580	parallel

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There are 11 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	250	first strand
Strand 2	C	282	286	parallel
Strand 3	C	339	344	parallel
Strand 4	C	372	377	parallel
Strand 5	C	394	399	parallel
Strand 6	C	438	443	parallel
Strand 7	C	460	465	parallel
Strand 8	C	491	496	parallel
Strand 9	C	518	523	parallel
Strand 10	C	543	548	parallel
Strand 11	C	569	571	parallel

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There are 8 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	586	589	first strand
Strand 2	C	624	627	parallel
Strand 3	C	644	646	parallel
Strand 4	C	665	670	parallel
Strand 5	C	690	696	parallel
Strand 6	C	714	720	parallel
Strand 7	C	737	744	parallel
Strand 8	C	761	767	parallel

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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	631	634	first strand
Strand 2	C	650	653	parallel
Strand 3	C	674	677	parallel
Strand 4	C	699	700	parallel
Strand 5	C	724	725	parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	638	639	first strand
Strand 2	C	659	661	parallel
Strand 3	C	683	685	parallel
Strand 4	C	705	709	parallel
Strand 5	C	728	732	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4OJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
4OJ5