Analysis of interatomic Contacts of Structural Units in PDB entry:
4OJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OJD entry

There is 1 chain in PDB entry 4OJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 ARG 34PHE 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 4OJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
H
143 148Right-handed alpha
Helix 2
2
H
195 197Right-handed 310
Helix 3
3
H
315 323Right-handed alpha
Helix 4
4
H
355 360Right-handed alpha
Helix 5
5
H
493 497Right-handed 310
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There are 8 sheets in PDB entry 4OJD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
46 49first strand
Strand 2
H
62 68anti-parallel
Strand 3
H
386 391anti-parallel
Strand 4
H
253 257anti-parallel
Strand 5
H
242 245anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
224 236first strand
Strand 2
H
208 221anti-parallel
Strand 3
H
102 122anti-parallel
Strand 4
H
375 380anti-parallel
Strand 5
H
363 368anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
269 275first strand
Strand 2
H
198 204anti-parallel
Strand 3
H
102 122anti-parallel
Strand 4
H
73 78anti-parallel
Strand 5
H
401 404anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
125 134first strand
Strand 2
H
184 193anti-parallel
Strand 3
H
163 169anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
303 305first strand
Strand 2
H
311 313anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
324 330first strand
Strand 2
H
335 340anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
466 473first strand
Strand 2
H
425 434anti-parallel
Strand 3
H
412 419anti-parallel
Strand 4
H
504 506parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
452 460first strand
Strand 2
H
436 443anti-parallel
Strand 3
H
483 489anti-parallel
Strand 4
H
498 502anti-parallel
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