Analysis of interatomic Contacts of Structural Units in PDB entry:
4OJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OJO entry

There are 3 chains in PDB entry 4OJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12GLU 769
B
 GLY 14GLU 769
C
 LYS 10ILE 768
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 4OJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 27Right-handed alpha
Helix 2
2
A
29 31Right-handed 310
Helix 3
3
A
87 94Right-handed alpha
Helix 4
4
A
140 144Right-handed 310
Helix 5
5
A
155 166Right-handed alpha
Helix 6
6
A
178 182Right-handed 310
Helix 7
7
A
187 192Right-handed 310
Helix 8
8
A
201 211Right-handed alpha
Helix 9
9
A
221 228Right-handed alpha
Helix 10
10
A
229 231Right-handed 310
Helix 11
11
A
308 314Right-handed alpha
Helix 12
12
A
363 367Right-handed 310
Helix 13
13
A
419 423Right-handed 310
Helix 14
14
A
484 488Right-handed 310
Helix 15
15
A
563 568Right-handed alpha
Helix 16
16
A
612 621Right-handed alpha
Helix 17
17
A
749 753Right-handed 310
Helix 18
18
B
15 27Right-handed alpha
Helix 19
19
B
29 31Right-handed 310
Helix 20
20
B
87 94Right-handed alpha
Helix 21
21
B
140 144Right-handed 310
Helix 22
22
B
155 166Right-handed alpha
Helix 23
23
B
178 182Right-handed 310
Helix 24
24
B
187 192Right-handed 310
Helix 25
25
B
201 213Right-handed alpha
Helix 26
26
B
221 228Right-handed alpha
Helix 27
27
B
308 314Right-handed alpha
Helix 28
28
B
363 367Right-handed 310
Helix 29
29
B
419 423Right-handed 310
Helix 30
30
B
484 488Right-handed 310
Helix 31
31
B
563 568Right-handed alpha
Helix 32
32
B
612 621Right-handed alpha
Helix 33
33
B
749 753Right-handed 310
Helix 34
34
C
11 27Right-handed alpha
Helix 35
35
C
29 31Right-handed 310
Helix 36
36
C
87 94Right-handed alpha
Helix 37
37
C
140 144Right-handed 310
Helix 38
38
C
155 165Right-handed alpha
Helix 39
39
C
178 183Right-handed 310
Helix 40
40
C
187 192Right-handed 310
Helix 41
41
C
201 211Right-handed alpha
Helix 42
42
C
221 228Right-handed alpha
Helix 43
43
C
308 314Right-handed alpha
Helix 44
44
C
363 367Right-handed 310
Helix 45
45
C
419 423Right-handed 310
Helix 46
46
C
484 488Right-handed 310
Helix 47
47
C
563 568Right-handed alpha
Helix 48
48
C
612 621Right-handed alpha
Helix 49
49
C
749 753Right-handed 310
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There are 33 sheets in PDB entry 4OJO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
47 50parallel
Strand 3
A
55 58anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
77 80anti-parallel
Strand 3
A
83 86anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
115 119parallel
Strand 3
A
122 126anti-parallel
Strand 4
A
151 154anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
132 134anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 200first strand
Strand 2
A
241 244parallel
Strand 3
A
271 274parallel
Strand 4
A
330 333parallel
Strand 5
A
355 356parallel
Strand 6
A
388 391parallel
Strand 7
A
411 414parallel
Strand 8
A
454 456parallel
Strand 9
A
481 483parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
297 299anti-parallel
Strand 3
A
288 291anti-parallel
Strand 4
A
317 319anti-parallel
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There are 12 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 237first strand
Strand 2
A
254 257parallel
Strand 3
A
324 327parallel
Strand 4
A
350 352parallel
Strand 5
A
383 385parallel
Strand 6
A
406 408parallel
Strand 7
A
449 451parallel
Strand 8
A
475 478parallel
Strand 9
A
500 505parallel
Strand 10
A
531 536parallel
Strand 11
A
554 557parallel
Strand 12
A
576 580parallel
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There are 11 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
282 286parallel
Strand 3
A
339 344parallel
Strand 4
A
372 377parallel
Strand 5
A
394 399parallel
Strand 6
A
438 443parallel
Strand 7
A
460 465parallel
Strand 8
A
491 496parallel
Strand 9
A
518 523parallel
Strand 10
A
543 548parallel
Strand 11
A
569 571parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 589first strand
Strand 2
A
624 627parallel
Strand 3
A
644 646parallel
Strand 4
A
665 670parallel
Strand 5
A
690 696parallel
Strand 6
A
714 720parallel
Strand 7
A
737 744parallel
Strand 8
A
761 768parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 634first strand
Strand 2
A
650 653parallel
Strand 3
A
675 677parallel
Strand 4
A
699 700parallel
Strand 5
A
724 725parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
638 639first strand
Strand 2
A
659 661parallel
Strand 3
A
683 685parallel
Strand 4
A
705 709parallel
Strand 5
A
728 732parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
47 50parallel
Strand 3
B
55 58anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
77 80anti-parallel
Strand 3
B
83 86anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
115 119parallel
Strand 3
B
122 126anti-parallel
Strand 4
B
151 154anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
132 134anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 219first strand
Strand 2
B
297 299anti-parallel
Strand 3
B
288 291anti-parallel
Strand 4
B
317 319anti-parallel
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There are 12 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 237first strand
Strand 2
B
254 257parallel
Strand 3
B
324 327parallel
Strand 4
B
350 352parallel
Strand 5
B
383 385parallel
Strand 6
B
406 408parallel
Strand 7
B
449 451parallel
Strand 8
B
475 478parallel
Strand 9
B
500 505parallel
Strand 10
B
531 536parallel
Strand 11
B
554 557parallel
Strand 12
B
576 580parallel
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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 244first strand
Strand 2
B
271 274parallel
Strand 3
B
330 333parallel
Strand 4
B
355 356parallel
Strand 5
B
388 391parallel
Strand 6
B
411 414parallel
Strand 7
B
454 456parallel
Strand 8
B
481 483parallel
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There are 11 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
282 286parallel
Strand 3
B
339 344parallel
Strand 4
B
372 377parallel
Strand 5
B
394 399parallel
Strand 6
B
438 443parallel
Strand 7
B
460 465parallel
Strand 8
B
491 496parallel
Strand 9
B
518 523parallel
Strand 10
B
543 548parallel
Strand 11
B
569 571parallel
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There are 8 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
586 589first strand
Strand 2
B
624 627parallel
Strand 3
B
644 646parallel
Strand 4
B
665 670parallel
Strand 5
B
690 696parallel
Strand 6
B
714 720parallel
Strand 7
B
737 744parallel
Strand 8
B
761 768parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
631 634first strand
Strand 2
B
650 653parallel
Strand 3
B
675 677parallel
Strand 4
B
699 700parallel
Strand 5
B
724 725parallel
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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
638 639first strand
Strand 2
B
659 661parallel
Strand 3
B
683 685parallel
Strand 4
B
705 709parallel
Strand 5
B
728 732parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 35first strand
Strand 2
C
47 50parallel
Strand 3
C
55 58anti-parallel
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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 72first strand
Strand 2
C
77 80anti-parallel
Strand 3
C
83 86anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 99first strand
Strand 2
C
115 119parallel
Strand 3
C
122 126anti-parallel
Strand 4
C
151 154anti-parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 110first strand
Strand 2
C
132 134anti-parallel
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There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
196 200first strand
Strand 2
C
241 244parallel
Strand 3
C
271 274parallel
Strand 4
C
330 333parallel
Strand 5
C
355 356parallel
Strand 6
C
388 391parallel
Strand 7
C
411 414parallel
Strand 8
C
454 456parallel
Strand 9
C
481 483parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 219first strand
Strand 2
C
297 299anti-parallel
Strand 3
C
288 291anti-parallel
Strand 4
C
317 319anti-parallel
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There are 12 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 237first strand
Strand 2
C
254 257parallel
Strand 3
C
324 327parallel
Strand 4
C
350 352parallel
Strand 5
C
383 385parallel
Strand 6
C
406 408parallel
Strand 7
C
449 451parallel
Strand 8
C
475 478parallel
Strand 9
C
500 505parallel
Strand 10
C
531 536parallel
Strand 11
C
554 557parallel
Strand 12
C
576 580parallel
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There are 11 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
248 250first strand
Strand 2
C
282 286parallel
Strand 3
C
339 344parallel
Strand 4
C
372 377parallel
Strand 5
C
394 399parallel
Strand 6
C
438 443parallel
Strand 7
C
460 465parallel
Strand 8
C
491 496parallel
Strand 9
C
518 523parallel
Strand 10
C
543 548parallel
Strand 11
C
569 571parallel
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There are 8 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
586 589first strand
Strand 2
C
624 627parallel
Strand 3
C
644 646parallel
Strand 4
C
665 670parallel
Strand 5
C
690 696parallel
Strand 6
C
714 720parallel
Strand 7
C
737 744parallel
Strand 8
C
761 767parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
631 634first strand
Strand 2
C
650 653parallel
Strand 3
C
675 677parallel
Strand 4
C
699 700parallel
Strand 5
C
724 725parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
638 639first strand
Strand 2
C
659 661parallel
Strand 3
C
683 685parallel
Strand 4
C
705 709parallel
Strand 5
C
728 732parallel
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