Analysis of interatomic Contacts of Structural Units in PDB entry:
4OJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OJU entry

There are 4 chains in PDB entry 4OJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24MSE 166
B
 VAL 26MSE 166
C
 ALA 24MSE 166
D
 GLU 28GLY 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4OJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 56Right-handed 310
Helix 2
2
B
53 56Right-handed 310
Helix 3
3
B
151 154Right-handed 310
Helix 4
4
C
53 56Right-handed 310
Helix 5
5
D
53 56Right-handed 310
Helix 6
6
D
151 154Right-handed 310
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There are 12 sheets in PDB entry 4OJU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 33first strand
Strand 2
A
36 41anti-parallel
Strand 3
A
46 51anti-parallel
Strand 4
A
74 80parallel
Strand 5
A
66 68anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 33first strand
Strand 2
A
36 41anti-parallel
Strand 3
A
46 51anti-parallel
Strand 4
A
74 80parallel
Strand 5
A
101 102parallel
Strand 6
A
124 125parallel
Strand 7
A
147 149parallel
Strand 8
B
160 163anti-parallel
Strand 9
B
138 141parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
92 94parallel
Strand 3
A
115 117parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
160 163parallel
Strand 3
B
147 149anti-parallel
Strand 4
B
124 125parallel
Strand 5
B
101 102parallel
Strand 6
B
74 80parallel
Strand 7
B
46 51parallel
Strand 8
B
36 41anti-parallel
Strand 9
B
27 33anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
160 163parallel
Strand 3
B
147 149anti-parallel
Strand 4
B
124 125parallel
Strand 5
B
101 102parallel
Strand 6
B
74 80parallel
Strand 7
B
66 68anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
92 94parallel
Strand 3
B
115 117parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 33first strand
Strand 2
C
36 41anti-parallel
Strand 3
C
46 51anti-parallel
Strand 4
C
74 80parallel
Strand 5
C
66 68anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 33first strand
Strand 2
C
36 41anti-parallel
Strand 3
C
46 51anti-parallel
Strand 4
C
74 80parallel
Strand 5
C
101 102parallel
Strand 6
C
124 125parallel
Strand 7
C
147 149parallel
Strand 8
D
160 163anti-parallel
Strand 9
D
138 141parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 62first strand
Strand 2
C
92 94parallel
Strand 3
C
115 117parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
138 140first strand
Strand 2
C
160 162parallel
Strand 3
D
147 149anti-parallel
Strand 4
D
124 125parallel
Strand 5
D
101 102parallel
Strand 6
D
74 80parallel
Strand 7
D
46 51parallel
Strand 8
D
36 40anti-parallel
Strand 9
D
30 33anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
138 140first strand
Strand 2
C
160 162parallel
Strand 3
D
147 149anti-parallel
Strand 4
D
124 125parallel
Strand 5
D
101 102parallel
Strand 6
D
74 80parallel
Strand 7
D
66 68anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 62first strand
Strand 2
D
92 94parallel
Strand 3
D
115 117parallel
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