Analysis of interatomic Contacts of Structural Units in PDB entry:
4OJX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OJX entry

There is 1 chain in PDB entry 4OJX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4OJX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 54Right-handed alpha
Helix 2
2
A
77 80Right-handed 310
Helix 3
3
A
91 97Right-handed alpha
Helix 4
4
A
101 108Right-handed alpha
Helix 5
5
A
109 120Right-handed alpha
Helix 6
6
A
130 133Right-handed 310
Helix 7
7
A
134 141Right-handed alpha
Helix 8
8
A
142 146Right-handed 310
Helix 9
9
A
158 169Right-handed alpha
Helix 10
10
A
177 181Right-handed 310
Helix 11
11
A
255 268Right-handed alpha
Helix 12
12
A
269 271Right-handed 310
Helix 13
13
A
287 292Right-handed alpha
Helix 14
14
A
296 312Right-handed alpha
Helix 15
15
A
335 351Right-handed alpha
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There are 3 sheets in PDB entry 4OJX. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
365 368anti-parallel
Strand 3
A
4 10anti-parallel
Strand 4
A
22 27anti-parallel
Strand 5
A
35 38anti-parallel
Strand 6
A
121 125parallel
Strand 7
A
153 157parallel
Strand 8
A
186 190parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
73 75anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
204 215anti-parallel
Strand 3
A
222 232anti-parallel
Strand 4
A
238 242anti-parallel
Strand 5
A
273 279parallel
Strand 6
A
321 325parallel
Strand 7
A
357 360parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il