Analysis of interatomic Contacts of Structural Units in PDB entry:
4OKU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OKU entry

There are 2 chains in PDB entry 4OKU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 62CYS 331
B
 ASP 62CYS 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4OKU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
66 70Right-handed 310
Helix 2
2
A
87 106Right-handed alpha
Helix 3
3
A
132 136Right-handed 310
Helix 4
4
A
137 146Right-handed alpha
Helix 5
5
A
157 170Right-handed alpha
Helix 6
6
A
193 198Right-handed alpha
Helix 7
7
A
198 206Right-handed alpha
Helix 8
8
A
252 254Right-handed 310
Helix 9
9
A
255 267Right-handed alpha
Helix 10
10
B
66 70Right-handed 310
Helix 11
11
B
87 106Right-handed alpha
Helix 12
12
B
132 136Right-handed 310
Helix 13
13
B
137 146Right-handed alpha
Helix 14
14
B
157 170Right-handed alpha
Helix 15
15
B
193 206Right-handed alpha
Helix 16
16
B
252 254Right-handed 310
Helix 17
17
B
255 267Right-handed alpha
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There are 6 sheets in PDB entry 4OKU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
113 120anti-parallel
Strand 3
A
75 82parallel
Strand 4
A
181 187parallel
Strand 5
A
209 216parallel
Strand 6
A
244 247parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
297 299anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 294first strand
Strand 2
A
326 330anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 128first strand
Strand 2
B
113 120anti-parallel
Strand 3
B
75 82parallel
Strand 4
B
181 187parallel
Strand 5
B
209 216parallel
Strand 6
B
244 247parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 273first strand
Strand 2
B
297 299anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 294first strand
Strand 2
B
326 329anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il