Analysis of interatomic Contacts of Structural Units in PDB entry:
4OMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OMF entry

There are 3 chains in PDB entry 4OMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 ALA 45LEU 275
A
 SER 2HIS 386
B
 VAL 2PHE 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 4OMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
G
58 66Right-handed alpha
Helix 2
2
G
70 78Right-handed alpha
Helix 3
3
G
109 122Right-handed alpha
Helix 4
4
G
130 136Right-handed alpha
Helix 5
5
G
137 142Right-handed 310
Helix 6
6
G
157 161Right-handed 310
Helix 7
7
G
174 187Right-handed alpha
Helix 8
8
G
189 200Right-handed alpha
Helix 9
9
G
208 214Right-handed alpha
Helix 10
10
G
215 218Right-handed 310
Helix 11
11
G
224 230Right-handed alpha
Helix 12
12
G
246 249Right-handed 310
Helix 13
13
G
253 259Right-handed alpha
Helix 14
14
G
265 274Right-handed alpha
Helix 15
15
A
42 48Right-handed alpha
Helix 16
16
A
53 60Right-handed alpha
Helix 17
17
A
61 63Right-handed 310
Helix 18
18
A
66 82Right-handed alpha
Helix 19
19
A
87 118Right-handed alpha
Helix 20
20
A
119 121Right-handed 310
Helix 21
21
A
122 146Right-handed alpha
Helix 22
22
A
164 196Right-handed alpha
Helix 23
23
A
218 222Right-handed 310
Helix 24
24
A
231 235Right-handed 310
Helix 25
25
A
238 245Right-handed alpha
Helix 26
26
A
260 269Right-handed alpha
Helix 27
27
A
275 301Right-handed alpha
Helix 28
28
A
349 359Right-handed alpha
Helix 29
29
A
360 363Right-handed 310
Helix 30
30
A
366 368Right-handed 310
Helix 31
31
A
369 377Right-handed alpha
Helix 32
32
A
380 386Right-handed alpha
Helix 33
33
B
16 23Right-handed alpha
Helix 34
34
B
27 39Right-handed alpha
Helix 35
35
B
64 71Right-handed alpha
Helix 36
36
B
80 83Right-handed 310
Helix 37
37
B
84 90Right-handed alpha
Helix 38
38
B
102 115Right-handed alpha
Helix 39
39
B
122 124Right-handed 310
Helix 40
40
B
139 149Right-handed alpha
Helix 41
41
B
154 158Right-handed 310
Helix 42
42
B
182 185Right-handed 310
Helix 43
43
B
189 195Right-handed 310
Helix 44
44
B
223 236Right-handed alpha
Helix 45
45
B
245 247Right-handed 310
Helix 46
46
B
250 276Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 4OMF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
80 83first strand
Strand 2
G
48 53parallel
Strand 3
G
96 102parallel
Strand 4
G
123 129parallel
Strand 5
G
166 168parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
105 106first strand
Strand 2
G
155 156anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
235 238first strand
Strand 2
G
241 244anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
17 23anti-parallel
Strand 3
A
29 36anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
158 159anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
249 252anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 326first strand
Strand 2
A
329 338anti-parallel
Strand 3
A
341 348anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 62first strand
Strand 2
B
44 53anti-parallel
Strand 3
B
97 101parallel
Strand 4
B
126 132parallel
Strand 5
B
205 208parallel
Strand 6
B
217 221anti-parallel
Strand 7
B
8 14anti-parallel
Strand 8
B
239 243anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 164first strand
Strand 2
B
167 171anti-parallel
Strand 3
B
176 180anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il