Analysis of interatomic Contacts of Structural Units in PDB entry:
4OMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OMR entry

There are 2 chains in PDB entry 4OMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5LEU 155
A
 MSE 157LEU 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4OMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 15Right-handed alpha
Helix 2
2
A
32 36Right-handed 310
Helix 3
3
A
40 54Right-handed alpha
Helix 4
4
A
75 80Right-handed 310
Helix 5
5
A
89 95Right-handed alpha
Helix 6
6
A
102 117Right-handed alpha
Helix 7
7
A
118 119Right-handed 310
Helix 8
8
A
135 144Right-handed alpha
Helix 9
9
A
158 163Right-handed 310
Helix 10
10
A
170 179Right-handed alpha
Helix 11
11
A
179 190Right-handed alpha
Helix 12
12
A
195 201Right-handed alpha
Helix 13
13
A
209 211Right-handed 310
Helix 14
14
A
212 227Right-handed alpha
Helix 15
15
A
228 243Right-handed alpha
Helix 16
16
A
246 265Right-handed alpha
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There are 2 sheets in PDB entry 4OMR. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 22first strand
Strand 2
A
25 30anti-parallel
Strand 3
A
60 65parallel
Strand 4
A
124 129parallel
Strand 5
A
146 150parallel
Strand 6
A
206 207parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
154 156parallel
Strand 3
A
193 194anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il