Analysis of interatomic Contacts of Structural Units in PDB entry:
4ONY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ONY entry

There are 2 chains in PDB entry 4ONY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12SER 594
B
 GLU 12SER 594
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 4ONY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
132 147Right-handed alpha
Helix 2
2
A
153 156Right-handed 310
Helix 3
3
A
180 188Right-handed alpha
Helix 4
4
A
193 197Right-handed 310
Helix 5
5
A
240 244Right-handed 310
Helix 6
6
A
259 269Right-handed alpha
Helix 7
7
A
279 286Right-handed alpha
Helix 8
8
A
289 294Right-handed alpha
Helix 9
9
A
319 323Right-handed 310
Helix 10
10
A
324 334Right-handed alpha
Helix 11
11
A
336 345Right-handed alpha
Helix 12
12
A
369 377Right-handed alpha
Helix 13
13
A
384 389Right-handed alpha
Helix 14
14
A
403 417Right-handed alpha
Helix 15
15
A
442 459Right-handed alpha
Helix 16
16
A
469 479Right-handed alpha
Helix 17
17
A
498 504Right-handed alpha
Helix 18
18
A
505 510Right-handed 310
Helix 19
19
A
521 534Right-handed alpha
Helix 20
20
A
536 554Right-handed alpha
Helix 21
21
A
586 590Right-handed 310
Helix 22
22
B
132 147Right-handed alpha
Helix 23
23
B
153 156Right-handed 310
Helix 24
24
B
180 188Right-handed alpha
Helix 25
25
B
193 197Right-handed 310
Helix 26
26
B
240 244Right-handed 310
Helix 27
27
B
259 269Right-handed alpha
Helix 28
28
B
279 286Right-handed alpha
Helix 29
29
B
289 294Right-handed alpha
Helix 30
30
B
319 323Right-handed 310
Helix 31
31
B
324 334Right-handed alpha
Helix 32
32
B
336 345Right-handed alpha
Helix 33
33
B
369 377Right-handed alpha
Helix 34
34
B
384 389Right-handed alpha
Helix 35
35
B
403 417Right-handed alpha
Helix 36
36
B
442 459Right-handed alpha
Helix 37
37
B
469 479Right-handed alpha
Helix 38
38
B
498 504Right-handed alpha
Helix 39
39
B
505 510Right-handed 310
Helix 40
40
B
521 534Right-handed alpha
Helix 41
41
B
536 554Right-handed alpha
Helix 42
42
B
586 590Right-handed 310
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There are 16 sheets in PDB entry 4ONY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
97 100anti-parallel
Strand 3
A
88 90anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 52first strand
Strand 2
A
251 257parallel
Strand 3
A
226 231anti-parallel
Strand 4
A
216 222anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 108first strand
Strand 2
A
114 119anti-parallel
Strand 3
A
168 173anti-parallel
Strand 4
A
158 165anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 277first strand
Strand 2
A
566 571anti-parallel
Strand 3
A
297 302anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 467first strand
Strand 2
A
435 440parallel
Strand 3
A
484 489parallel
Strand 4
A
310 315anti-parallel
Strand 5
A
557 559anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 351first strand
Strand 2
A
561 562anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 422first strand
Strand 2
A
425 427anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 575first strand
Strand 2
A
591 592anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
97 100anti-parallel
Strand 3
B
88 90anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 52first strand
Strand 2
B
251 257parallel
Strand 3
B
226 231anti-parallel
Strand 4
B
216 222anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 108first strand
Strand 2
B
114 119anti-parallel
Strand 3
B
168 173anti-parallel
Strand 4
B
158 165anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 277first strand
Strand 2
B
566 571anti-parallel
Strand 3
B
297 302anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 467first strand
Strand 2
B
435 440parallel
Strand 3
B
484 489parallel
Strand 4
B
310 315anti-parallel
Strand 5
B
557 559anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 351first strand
Strand 2
B
561 562anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 422first strand
Strand 2
B
425 427anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
574 575first strand
Strand 2
B
591 592anti-parallel
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